Add support for merged netCDF file ingestion#9
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…uture.R (set in config); use all outputs in production to aid in development of multi-crop workflow
…add change since start as delta_<variable> to standard output; aggregate output to monthly means
no longer load renv in .Rprofile; hard code path to renv libraries in .Renviron
Revise mixed_system_prototype.qmd for clarity and to fix incorrect labels.
Co-authored-by: Chris Black <chris@ckblack.org>
…on density and stock and mask counties that cumulatively contribute <1% of total (consider this below detection limit given uncertainty)
…y and stock, save variable importance results; add logging and memory tracking
…qmd` from `downscaling_report.qmd` - Updated `040_downscale.R` to improve naming conventions and ensure training covariate matrices are saved correctly. - Refactor `041_aggregate_to_county.R` to streamline the aggregation process and improve readability. - Enhance `042_downscale_analysis.R` to load predictions and covariates, compute variable importance, and generate plots for partial dependence, ALE, and ICE effects using the `iml` package. - Improved logging.
…ove masks, re-organize plots for ease of comparison
…mportance report in variable_importance.qmd
…entation. Misc updates mostly to formatting.
Co-authored-by: Chris Black <chris@ckblack.org>
Co-authored-by: Chris Black <chris@ckblack.org>
Co-authored-by: Chris Black <chris@ckblack.org>
… scenario support
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Summary
Adds support for reading concatenated netcdf files in
030_extract_sipnet_output.R,scripts/030_extract_sipnet_output.Rout/merged_nc/YYYY.ncENS-*/YYYY.ncfiles if merged files are not presentdocs/workflow_documentation.mdCloses #169
Notes
This PR addresses Task 2 of Issue #169. Task 1 (generating merged files) -- is deferred