small vignette for sample handling order randomization#58

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julianesiebourg wants to merge 20 commits intomainfrom

57-sample-handling-order-randomization-vignette

Commits on Jul 16, 2025

small vignette for sample handling order randomization
julianesiebourg
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Commits on Oct 20, 2025

re render vignettes
julianesiebourg
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Commits on Oct 23, 2025

_fmt
Iakov Davydov
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seq_len is better than 1:nrow() because of an edge case
Iakov Davydov
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use new pipe |>
Iakov Davydov
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wrap long paragraphs
Iakov Davydov
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_fmt
Iakov Davydov
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Commits on Dec 22, 2025

remove gt and ComplexHeatmap dependencies and explain scoring function.
julianesiebourg
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Commits on Dec 23, 2025

add conclusion
julianesiebourg
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Commits on Jan 5, 2026

_fmt
Iakov Davydov
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add alternative approach to scoring for sample handling order
Iakov Davydov
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sample handling order: worst score is repeated samples
Iakov Davydov
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Commits on Jan 14, 2026

_fmt
Iakov Davydov
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AGENTS.md
Iakov Davydov
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mk_min_distance_score(), use it in vignette + tests
Iakov Davydov
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Rbuildignore
Iakov Davydov
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_news
Iakov Davydov
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v0.5.1
Iakov Davydov
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rm data.table check silencing from AGENTS.md; might be not best practice
Iakov Davydov
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Commits on Mar 27, 2026

remove non working scoring
julianesiebourg
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