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Description

This repo has code and partial results used to produce the research paper: https://zenodo.org/records/19631281 Note: /paper/ contains the source latex file for the paper.

The original source images and image descriptions are from: https://zenodo.org/records/16619228

TODO

add refs to sample images in the body continue proof read discussion verify revity eccentricity reference. verify DVICE microscope images technique. remove images from PDF

To reproduce the results

  1. download the dataset from zenodo. extract all and copy the 'EXP stage' folder to the root of this repo clone.
  2. create the converted_pngs dir from the source images. use convert_images_to_png.py
  3. create AIRVIC account at https://airvic.turkai.com/, and upload images to view results.
  4. run each individual_image_.py, you'll need subscriptions to each, and API keys in a .env file for this. you can skip this step and use the cpe_detection_results_.json files.
  5. run compare-results.py FIXME, this is stale instructions

.env file example

In order to execute step 3 above, you'll need API keys for each of the AI models. your keys are stored in a .env file that is not comitted to git.

Make a file named ".env", place it in the root of the repo clone. Copy code below, and add your API keys.

GOOGLE_API_KEY=<your key>
OPENAI_API_KEY=sk-proj-<rest of your key>
ANTHROPIC_API_KEY=sk-ant-<rest of your key>
XAI_API_KEY=xai-<rest of your key>

Disclaimer

This work was quite iterative. Many paths were started, and only few succeeded. Not all files still in the repo are used to produce the final results.

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code for automating the processing of images from https://zenodo.org/records/16619228

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