Skip to content

fix(test): Fix expected results after version bump #466

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
blanca-pablos merged 1 commit into from
Mar 6, 2026
Merged

fix(test): Fix expected results after version bump #466

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 1 addition & 2 deletions tests/aignostics/qupath/gui_test.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -302,7 +302,6 @@ async def test_gui_run_qupath_install_to_inspect( # noqa: C901, PLR0912, PLR091
# Check for (1) spot added to QuPath project, (2) heatmaps added, (3) spot annotated
try:
project_info = json.loads(output)
annotations_total = 0
spot_found = False
spot_width = None
spot_height = None
Expand All @@ -329,7 +328,7 @@ async def test_gui_run_qupath_install_to_inspect( # noqa: C901, PLR0912, PLR091
), (
f"Expected approximately {SPOT_0_EXPECTED_CELLS_CLASSIFIED[0]} "
f"({SPOT_0_EXPECTED_CELLS_CLASSIFIED[1]}% tolerance) annotations in the QuPath results, "
f"but found {annotations_total}"
f"but found {spot_annotations}"
)
except json.JSONDecodeError as e:
pytest.fail(f"Failed to parse QuPath inspect output as JSON: {e}\nOutput: {output!r}\n")
Expand Down
20 changes: 10 additions & 10 deletions tests/constants_test.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -112,17 +112,17 @@
SPECIAL_APPLICATION_VERSION = "0.99.0"

SPOT_0_EXPECTED_RESULT_FILES = [
("tissue_qc_segmentation_map_image.tiff", 1540764, 10),
("tissue_qc_geojson_polygons.json", 160668, 10),
("tissue_segmentation_geojson_polygons.json", 853784, 10),
("readout_generation_slide_readouts.csv", 302252, 10),
("readout_generation_cell_readouts.csv", 1472661, 10),
("cell_classification_geojson_polygons.json", 9939791, 10),
("tissue_segmentation_segmentation_map_image.tiff", 2807584, 10),
("tissue_segmentation_csv_class_information.csv", 451, 10),
("tissue_qc_csv_class_information.csv", 284, 10),
("tissue_qc_segmentation_map_image.tiff", 1642856, 10),
("tissue_qc_geojson_polygons.json", 259955, 10),
("tissue_segmentation_geojson_polygons.json", 887003, 10),
("readout_generation_slide_readouts.csv", 303217, 10),
("readout_generation_cell_readouts.csv", 1658344, 10),
("cell_classification_geojson_polygons.json", 11218951, 10),
("tissue_segmentation_segmentation_map_image.tiff", 2945078, 10),
("tissue_segmentation_csv_class_information.csv", 452, 10),
("tissue_qc_csv_class_information.csv", 285, 10),
]
SPOT_0_EXPECTED_CELLS_CLASSIFIED = (35160, 10)
SPOT_0_EXPECTED_CELLS_CLASSIFIED = (39798, 10)

SPOT_1_EXPECTED_RESULT_FILES = [
("tissue_qc_segmentation_map_image.tiff", 469040, 10),
Expand Down
Loading