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Added VeNom cross-references to 92 existing cat breed terms from the VeNom veterinary coding system (https://venomcoding.org/venom-codes/). Mappings were identified through automated fuzzy matching and manual review of the VeNom cat breed data. All xrefs include source attribution. Coverage: 92 of 169 VeNom cat breed terms mapped to existing VBO terms (54% coverage). Unmapped terms include generic categories, color variants, and rare/experimental breeds requiring further research. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
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Pull Request Overview
This PR adds VeNom veterinary coding system cross-references to 92 cat breed terms in the Vertebrate Breed Ontology, achieving 54% coverage of VeNom cat breed terms. All xrefs include proper source attribution to the VeNom coding system.
Key Changes:
- Added 92 VeNom xrefs to existing cat breed terms with consistent formatting
- One cat breed (Australian Mist) received two VeNom codes
- All xrefs follow the format:
xref: VeNom:##### {source="https://venomcoding.org/venom-codes/"}
| synonym: "Chihuahua" EXACT most_common_name [] {source="https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=71", source="https://www.akc.org/dog-breeds/chihuahua/", source="https://en.wikipedia.org/wiki/Chihuahua_(dog)", source="https://www.ukcdogs.com/chihuahua", source="http://omia.org", source="https://www.fci.be/en/nomenclature/CHIHUAHUA-218.html"} | ||
| synonym: "chihuahueno" EXACT [] {source="https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=71"} | ||
| synonym: "Chihuahueño" EXACT [] {source="https://www.fci.be/en/nomenclature/CHIHUAHUA-218.html"} | ||
| synonym: "techichi" RELATED [] {source="https://orcid.org/0000-0002-4142-7153"} |
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This change adds a synonym to a dog breed (Chihuahua) which is unrelated to the purpose of this PR. The PR description states "Added VeNom cross-references to 92 existing cat breed terms" and makes no mention of adding dog breed synonyms. This appears to be an accidental inclusion that should be removed from this PR or documented separately.
- Added Anna Maria Masci (https://orcid.org/0000-0003-1940-6740) as contributor to all 92 cat breeds that received VeNom xrefs - Created new term VBO:7770001 for Techichi (Dog), an extinct ancestral breed from the Toltec civilization - Added proper "has foundation stock" relationship from Chihuahua to Techichi (removed incorrect synonym) - Techichi properly documented as extinct breed with distinct characteristics from modern Chihuahua 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
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Summary
Added VeNom cross-references to 92 existing cat breed terms from the VeNom veterinary coding system.
Changes
src/ontology/vbo-edit.obohttps://venomcoding.org/venom-codes/Coverage
Examples
Validation
✅ ROBOT syntax validation passed
✅ All xrefs properly formatted
✅ No duplicate xrefs added
Source
Data from: https://gist.github.com/cmungall/fdf549c3e6c3ca88f4478ba0dc768c5d
🤖 Generated with Claude Code