- Trinity
Trinity assembles transcript sequences from Illumina RNA-Seq data. - megahit
MEGAHIT is an ultra-fast and memory-efficient NGS assembler. It is optimized for metagenomes, but also works well on generic single genome assembly (small or mammalian size) and single-cell assembly.
- Diamond
DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. - interproscan 蛋白数据库uniprot,GO term注释,KEGG注释,pfam注释
- ncbi nr
nr,nt,swissprot数据库 - eggNOG-mapper
EggNOG-mapper is a tool for fast functional annotation of novel sequences. It uses precomputed orthologous groups and phylogenies from the eggNOG database (http://eggnog5.embl.de) to transfer functional information from fine-grained orthologs only.
Contect me: wangjingtian@stu.xmu.edu.cn
Visit my github homepage here