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By Sample Summary of RNASeq Data
Laura Saba edited this page Jan 16, 2015
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3 revisions
| Strain | Sample ID | Brain | Left Ventricle | Liver | Brown Adipose Tissue |
|---|---|---|---|---|---|
| HXB1 | HXB1_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB1 | HXB1_2 | in freezer | in freezer | in freezer | in freezer |
| HXB1 | HXB1_3 | in freezer | in freezer | in freezer | in freezer |
| HXB1 | HXB1_4 | in freezer | in freezer | in freezer | in freezer |
| HXB2 | HXB2_1 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB2 | HXB2_2 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB2 | HXB2_3 | in freezer | in freezer | in freezer | in freezer |
| HXB2 | HXB2_4 | in freezer | in freezer | in freezer | in freezer |
| HXB3 | HXB3_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB3 | HXB3_2 | in freezer | in freezer | in freezer | in freezer |
| HXB3 | HXB3_3 | in freezer | in freezer | in freezer | in freezer |
| HXB3 | HXB3_4 | in freezer | in freezer | in freezer | in freezer |
| HXB4 | HXB4_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB4 | HXB4_2 | in freezer | in freezer | in freezer | in freezer |
| HXB4 | HXB4_3 | in freezer | in freezer | in freezer | in freezer |
| HXB4 | HXB4_4 | in freezer | in freezer | in freezer | in freezer |
| HXB5 | HXB5_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB5 | HXB5_2 | in freezer | in freezer | in freezer | in freezer |
| HXB5 | HXB5_3 | in freezer | in freezer | in freezer | in freezer |
| HXB5 | HXB5_4 | in freezer | in freezer | in freezer | in freezer |
| HXB7 | HXB7_1 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB7 | HXB7_2 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB7 | HXB7_3 | in freezer | in freezer | in freezer | in freezer |
| HXB7 | HXB7_4 | in freezer | in freezer | in freezer | in freezer |
| HXB10 | HXB10_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB10 | HXB10_2 | in freezer | in freezer | in freezer | in freezer |
| HXB10 | HXB10_3 | in freezer | in freezer | in freezer | in freezer |
| HXB10 | HXB10_4 | in freezer | in freezer | in freezer | in freezer |
| HXB13 | HXB13_1 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB13 | HXB13_2 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB13 | HXB13_3 | in freezer | in freezer | in freezer | in freezer |
| HXB13 | HXB13_4 | in freezer | in freezer | in freezer | in freezer |
| HXB15 | HXB15_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB15 | HXB15_2 | in freezer | in freezer | in freezer | in freezer |
| HXB15 | HXB15_3 | in freezer | in freezer | in freezer | in freezer |
| HXB15 | HXB15_4 | in freezer | in freezer | in freezer | in freezer |
| HXB17 | HXB17_1 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB17 | HXB17_2 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB17 | HXB17_3 | in freezer | in freezer | in freezer | in freezer |
| HXB17 | HXB17_4 | in freezer | in freezer | in freezer | in freezer |
| HXB18 | HXB18_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB18 | HXB18_2 | in freezer | in freezer | in freezer | in freezer |
| HXB18 | HXB18_3 | in freezer | in freezer | in freezer | in freezer |
| HXB18 | HXB18_4 | in freezer | in freezer | in freezer | in freezer |
| HXB20 | HXB20_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB20 | HXB20_2 | in freezer | in freezer | in freezer | in freezer |
| HXB20 | HXB20_3 | in freezer | in freezer | in freezer | in freezer |
| HXB20 | HXB20_4 | in freezer | in freezer | in freezer | in freezer |
| HXB21 | HXB21_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB21 | HXB21_2 | in freezer | in freezer | in freezer | in freezer |
| HXB21 | HXB21_3 | in freezer | in freezer | in freezer | in freezer |
| HXB21 | HXB21_4 | in freezer | in freezer | in freezer | in freezer |
| HXB22 | HXB22_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB22 | HXB22_2 | in freezer | in freezer | in freezer | in freezer |
| HXB22 | HXB22_3 | in freezer | in freezer | in freezer | in freezer |
| HXB22 | HXB22_4 | in freezer | in freezer | in freezer | in freezer |
| HXB23 | HXB23_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB23 | HXB23_2 | in freezer | in freezer | in freezer | in freezer |
| HXB23 | HXB23_3 | in freezer | in freezer | in freezer | in freezer |
| HXB23 | HXB23_4 | in freezer | in freezer | in freezer | in freezer |
| HXB24 | HXB24_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB24 | HXB24_2 | in freezer | in freezer | in freezer | in freezer |
| HXB24 | HXB24_3 | in freezer | in freezer | in freezer | in freezer |
| HXB24 | HXB24_4 | in freezer | in freezer | in freezer | in freezer |
| HXB25 | HXB25_1 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB25 | HXB25_2 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB25 | HXB25_3 | in freezer | in freezer | in freezer | in freezer |
| HXB25 | HXB25_4 | in freezer | in freezer | in freezer | in freezer |
| HXB27 | HXB27_1 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB27 | HXB27_2 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| HXB27 | HXB27_3 | in freezer | in freezer | in freezer | in freezer |
| HXB27 | HXB27_4 | in freezer | in freezer | in freezer | in freezer |
| HXB29 | HXB29_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB29 | HXB29_2 | in freezer | in freezer | in freezer | in freezer |
| HXB29 | HXB29_3 | in freezer | in freezer | in freezer | in freezer |
| HXB29 | HXB29_4 | in freezer | in freezer | in freezer | in freezer |
| HXB31 | HXB31_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| HXB31 | HXB31_2 | in freezer | in freezer | in freezer | in freezer |
| HXB31 | HXB31_3 | in freezer | in freezer | in freezer | in freezer |
| HXB31 | HXB31_4 | in freezer | in freezer | in freezer | in freezer |
| BXH2 | BXH2_1 | total RNA sequenced (24Sep14); small RNA sequenced (23Sep14) | in freezer | in freezer | in freezer |
| BXH2 | BXH2_2 | in freezer | in freezer | in freezer | in freezer |
| BXH2 | BXH2_3 | in freezer | in freezer | in freezer | in freezer |
| BXH2 | BXH2_4 | in freezer | in freezer | in freezer | in freezer |
| BXH3 | BXH3_1 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH3 | BXH3_2 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH3 | BXH3_3 | in freezer | in freezer | in freezer | in freezer |
| BXH3 | BXH3_4 | in freezer | in freezer | in freezer | in freezer |
| BXH5 | BXH5_1 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH5 | BXH5_2 | in freezer | in freezer | in freezer | in freezer |
| BXH5 | BXH5_3 | in freezer | in freezer | in freezer | in freezer |
| BXH5 | BXH5_4 | in freezer | in freezer | in freezer | in freezer |
| BXH6 | BXH6_1 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH6 | BXH6_2 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH6 | BXH6_3 | in freezer | in freezer | in freezer | in freezer |
| BXH6 | BXH6_4 | in freezer | in freezer | in freezer | in freezer |
| BXH8 | BXH8_1 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH8 | BXH8_2 | in freezer | in freezer | in freezer | in freezer |
| BXH8 | BXH8_3 | in freezer | in freezer | in freezer | in freezer |
| BXH8 | BXH8_4 | in freezer | in freezer | in freezer | in freezer |
| BXH9 | BXH9_1 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH9 | BXH9_2 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH9 | BXH9_3 | in freezer | in freezer | in freezer | in freezer |
| BXH9 | BXH9_4 | in freezer | in freezer | in freezer | in freezer |
| BXH10 | BXH10_1 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH10 | BXH10_2 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH10 | BXH10_3 | in freezer | in freezer | in freezer | in freezer |
| BXH10 | BXH10_4 | in freezer | in freezer | in freezer | in freezer |
| BXH11 | BXH11_1 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH11 | BXH11_2 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH11 | BXH11_3 | in freezer | in freezer | in freezer | in freezer |
| BXH11 | BXH11_4 | in freezer | in freezer | in freezer | in freezer |
| BXH12 | BXH12_1 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| BXH12 | BXH12_2 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | in freezer | in freezer | in freezer |
| BXH12 | BXH12_3 | in freezer | in freezer | in freezer | in freezer |
| BXH12 | BXH12_4 | in freezer | in freezer | in freezer | in freezer |
| BXH13 | BXH13_1 | total RNA sequenced (20Nov14) | in freezer | in freezer | in freezer |
| BXH13 | BXH13_2 | in freezer | in freezer | in freezer | in freezer |
| BXH13 | BXH13_3 | in freezer | in freezer | in freezer | in freezer |
| BXH13 | BXH13_4 | in freezer | in freezer | in freezer | in freezer |
| BN-Lx/Cub | BNLx_1 | total RNA sequenced (20Nov14) | total RNA sequenced (02Jun14); small RNA sequenced (19May14) | in freezer | in freezer |
| BN-Lx/Cub | BNLx_2 | total RNA sequenced (20Nov14) | total RNA sequenced (02Jun14); small RNA sequenced (19May14) | in freezer | in freezer |
| BN-Lx/Cub | BNLx_3 | in freezer | total RNA sequenced (02Jun14); small RNA sequenced (19May14) | in freezer | in freezer |
| BN-Lx/Cub | BNLx_4 | in freezer | total RNA sequenced (02Jun14); small RNA sequenced (19May14) | in freezer | in freezer |
| SHR/Ola | SHR_1 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14); REPLICATE (same extraction/different library prep) - total RNA sequenced (24Sep14) and small RNA sequenced (23Sep14); REPLICATE2 total RNA sequenced (20Nov14) | total RNA sequenced (02Jun14); small RNA sequenced (19May14) | in freezer | in freezer |
| SHR/Ola | SHR_2 | total RNA sequenced (05Sep14); small RNA sequenced (21Jul14) | total RNA sequenced (02Jun14); small RNA sequenced (19May14) | in freezer | in freezer |
| SHR/Ola | SHR_3 | in freezer | total RNA sequenced (02Jun14); small RNA sequenced (19May14) | in freezer | in freezer |
| SHR/Ola | SHR_4 | in freezer | total RNA sequenced (02Jun14); small RNA sequenced (19May14) | in freezer | in freezer |
| Tissue | Average Number of Samples Per Strain (total RNA) | Number of Strains with At Least 1 Sample (total RNA) | Number of Strains with All 4 Samples Per Strain (total RNA) | Average Number of Samples Per Strain (small RNA) | Number of Strains with At Least 1 Sample (small RNA) | Number of Strains with All 4 Samples Per Strain (small RNA) |
|---|---|---|---|---|---|---|
| brain | 1.44 | 32 | 0 | 0.97 | 23 | 0 |
| liver | 0.00 | 0 | 0 | 0.00 | 0 | 0 |
| heart | 0.25 | 2 | 2 | 0.25 | 2 | 2 |
| bat | 0.00 | 0 | 0 | 0.00 | 0 | 0 |