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Coverage fixes #710

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8680de1
[TRAVIS] fix coverage lines
Jun 6, 2020
a3465a9
fix badges in README to use SyneRBI
Jun 6, 2020
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13 changes: 8 additions & 5 deletions .travis.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -223,7 +223,8 @@ before_install:
- popd
# no point re-downloading SIRF - just use local version
# N.B.: don't put into build matrix to allow caching.
- BUILD_FLAGS="$BUILD_FLAGS -DPYVER=$PYMVER -DSIRF_SOURCE_DIR:PATH=$PWD -DDISABLE_GIT_CHECKOUT_SIRF=ON"
- SIRF_SOURCE_DIR=$PWD
- BUILD_FLAGS="$BUILD_FLAGS -DPYVER=$PYMVER -DSIRF_SOURCE_DIR:PATH=$SIRF_SOURCE_DIR -DDISABLE_GIT_CHECKOUT_SIRF=ON"
# get SuperBuild
- cd ..
- git clone https://github.com/CCPPETMR/SIRF-SuperBuild --recursive -b master
Expand Down Expand Up @@ -259,8 +260,10 @@ script:
fi

after_success:
- pushd ../SIRF
- sed -r 's/SIRF-SuperBuild\/INSTALL\/python\/sirf\/(\w*)\.py/SIRF\/src\/x\1\/p\1\/\1.py/g' ../SIRF-SuperBuild/sources/SIRF/.coverage > .coverage
- codecov
- coveralls
- pushd $SIRF_SOURCE_DIR
# replace name of installed .py files in .coverage (as OSX sed is tricky with sed -i, first write to tmp file, then move to .coverage)
- sed -E 's/SIRF-SuperBuild\/INSTALL\/python\/sirf\/(\w*)\.py/SIRF\/src\/x\1\/p\1\/\1.py/g' $SIRF_SOURCE_DIR/.coverage > .coverage.tmp
- mv .coverage.tmp .coverage
- $PY_EXE -m codecov
- $PY_EXE -m coveralls
- popd
12 changes: 6 additions & 6 deletions README.md
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Expand Up @@ -9,9 +9,9 @@ Platform for Synergistic Reconstruction for Biomedical Imaging (formerly CCP PET
Please start with our latest [User's Guide](doc/UserGuide.md).
See [our Wiki page for installation instructions](https://github.com/CCPPETMR/SIRF/wiki/Installation-instructions).

[coveralls-badge]: https://coveralls.io/repos/github/CCPPETMR/SIRF/badge.svg?branch=master
[coveralls]: https://coveralls.io/github/CCPPETMR/SIRF?branch=master
[codecov-badge]: https://codecov.io/gh/CCPPETMR/SIRF/branch/master/graph/badge.svg
[codecov]: https://codecov.io/gh/CCPPETMR/SIRF
[travis-badge]: https://travis-ci.org/CCPPETMR/SIRF.svg?branch=master
[travis]: https://travis-ci.org/CCPPETMR/SIRF
[coveralls-badge]: https://coveralls.io/repos/github/SyneRBI/SIRF/badge.svg?branch=master
[coveralls]: https://coveralls.io/github/SyneRBI/SIRF?branch=master
[codecov-badge]: https://codecov.io/gh/SyneRBI/SIRF/branch/master/graph/badge.svg
[codecov]: https://codecov.io/gh/SyneRBI/SIRF
[travis-badge]: https://travis-ci.org/SyneRBI/SIRF.svg?branch=master
[travis]: https://travis-ci.org/SyneRBI/SIRF