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SkyeAv/README.md

Skye Lane Goetz

Applied AI/ML Engineer | Biomedical Data Scientist

  • Languages: Python, Elixir, SQL, Shell, LaTeX, Nim, Julia
  • AI/ML: PyTorch, LightGBM, Scikit-learn, LangGraph, MCP, Transformers (HuggingFace), PEFT, Diffusers, Ollama, Snorkel
  • Data & Storage: Polars, DuckDB, PostgreSQL, SQLite, ChromaDB, Spark, NumPy
  • Knowledge Graphs: Biolink, KGX, LinkML, Ontology Mapping, Neo4j, NetworkX, Graph Centrality
  • NLP: spaCy, NLTK, Sentence Transformers, BERT, TF-IDF, Text Classification, PCA
  • DevOps/Infrastructure: Nix/NixOS, Docker, FastAPI, Kubernetes, GitHub Packages/Actions
  • Domain: Multiomic Data, Shotgun Metagenomics, Polygenic Risk Scores, Organic Chemistry, DFT

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  1. Tablassert Tablassert Public

    Tablassert is a highly performant declarative knowledge graph backend designed to extract knowledge assertions from tabular data while exporting NCATS Translator-compliant Knowledge Graph Exchange…

    Python 4

  2. POLY-PROMPT-TEAM-7/ParkerBackend POLY-PROMPT-TEAM-7/ParkerBackend Public

    ParkerBackend is a FastAPI backend that turns uploaded learning materials into a queryable knowledge graph. It is built for student-facing workflows: upload course content, run AI extraction, and q…

    Python 1

  3. QualifiersMCP QualifiersMCP Public

    QualifiersMCP is an MCP server for authoring and validating Tablassert table configuration files with Biolink qualifiers. It provides tools to fetch qualifier documentation, convert YAML/JSON table…

    Python 1

  4. POLY-PROMPT-TEAM-7/StudyOntology POLY-PROMPT-TEAM-7/StudyOntology Public

    StudyOntology transforms scattered course materials (PDFs, slides, notes) into connected knowledge graphs. Upload your documents to see how concepts, theories, methods, and people relate to each ot…

    Python 2

  5. CTClassifier CTClassifier Public

    LightGBM Based Declarative GPU Accelerated Bionomial Classification Of Clinical Trial Data Equiped With Multiple Vizualizations And Exports. Based On AACT Database.

    Python 1

  6. TableConfigAgent TableConfigAgent Public

    A Configurable Agentic Platform (With Hugging Face Transformers And Langchain) To Draft Semantically Tablassert TableConfigs From Natural Language Inputs.

    Python 2