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Add biomethods provenance assistant#368

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haki203:biomethods-provenance-assistant
Open

Add biomethods provenance assistant#368
haki203 wants to merge 1 commit into
SCIBASE-AI:mainfrom
haki203:biomethods-provenance-assistant

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@haki203 haki203 commented May 22, 2026

/claim #13

Summary

  • Adds a self-contained biomethods specimen and reagent provenance assistant for issue AI-Assisted Research Tools (MVP Level) #13.
  • Checks biospecimen source/context, cell-line authentication and mycoplasma evidence, reagent vendor/catalog/lot/RRID traceability, and reagent batch conflicts.
  • Emits deterministic JSON, Markdown, SVG, and MP4 reviewer artifacts from synthetic data only.

Safety

  • Synthetic data only.
  • No patient data, private lab data, credentials, external APIs, network calls, or payout details.

Validation

  • node --test biomethods-provenance-assistant/test.js -> 4 tests passed
  • FFMPEG_PATH= node biomethods-provenance-assistant/demo.js -> generated reviewer artifacts and reports/demo.mp4
  • node --check biomethods-provenance-assistant/index.js
  • node --check biomethods-provenance-assistant/sample-data.js
  • node --check biomethods-provenance-assistant/demo.js
  • node --check biomethods-provenance-assistant/test.js
  • ffmpeg -v error -i biomethods-provenance-assistant/reports/demo.mp4 -f null - -> decoded without errors
  • git diff --check
  • git diff --cached --check

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haki203 commented May 22, 2026

@algora-pbc /claim #13 #368

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