Adding an option to fit BIDS-study layout#361

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djarecka wants to merge 33 commits intoPennLINC:mainfrom

djarecka:structurechange

Commits on Apr 16, 2026

Add custom analysis_path support with configurable analysis directory name
djarecka
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Fix typos in installation instructions

tien-tong
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djarecka
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Update eg_fmriprep-24-1-1_ingressed-fs.yaml

tien-tong
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djarecka
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Update eg_fmriprep-24-1-1_ingressed-fs.yaml

tien-tong
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djarecka
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Update eg_fmriprep-24-1-1_ingressed-fs.yaml

tien-tong
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djarecka
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Update eg_fmriprep-24-1-1_ingressed-fs.yaml

tien-tong
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djarecka
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Update eg_freesurferpost-unstable_ingressed-fs.yaml

tien-tong
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djarecka
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change tests/pytest_in_docker.sh

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Update babs-status.rst

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Update babs-status.rst

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Update babs-status.rst

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Update whats_new.md for version 0.5.3

tien-tong
authored and
djarecka
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Add BABS chaining to run 2 BIDS apps in a pipeline (#316)

tien-tong
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djarecka
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Fix `babs submit --select` argument parsing (#312)

authored and
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Update installation.rst (#309)

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Update eg_aslprep-0-7-5.yaml (#304)

B-Sevchik
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Fix coverage (#318)

tien-tong
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edit nordic-fmriprep pipeline

tien-tong
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djarecka
committed
add 0.5.4 release notes

tien-tong
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djarecka
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Add `--throttle` option to `babs init` for SLURM array job throttling (#321)

tien-tong
authored and
djarecka
committed
Fix `babs merge` error when deleting merge_ds (#322)

tien-tong
authored and
djarecka
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Allow submission when all running jobs are in CG state (#332)

tien-tong
authored and
djarecka
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Allow resubmission of failed, non-running jobs when other jobs are running (#335)

tien-tong
authored and
djarecka
committed
Change `participant_job` to use `git sparse-checkout` (#337)

tien-tong
authored and
djarecka
committed
Use conda to install niworkflows and scipy instead of pip (#340)

tsalo
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djarecka
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Remove mentions of `babs submit --all` and `babs submit --job`(#341)

authored and
djarecka
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Fix `babs init --list_sub_file` (#345)

tien-tong
authored and
djarecka
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Fix writable check for NFS/ACL filesystems (#348)

authored and
djarecka
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Fix `babs merge` (#351)

tien-tong
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djarecka
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add instruction to get containers

tien-tong
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djarecka
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Do specify which branch to push (#352)

yarikoptic
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djarecka
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Fix test scripts to work on any machine (#346)

authored and
djarecka
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Custom analysis_path support: adding .babs directory for config/RIA storage
djarecka
committed

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Adding an option to fit BIDS-study layout#361

Adding an option to fit BIDS-study layout#361
djarecka wants to merge 33 commits intoPennLINC:mainfrom
djarecka:structurechange

Commits on Apr 16, 2026

Add custom analysis_path support with configurable analysis directory name

Fix typos in installation instructions

Update eg_fmriprep-24-1-1_ingressed-fs.yaml

Update eg_fmriprep-24-1-1_ingressed-fs.yaml

Update eg_fmriprep-24-1-1_ingressed-fs.yaml

Update eg_fmriprep-24-1-1_ingressed-fs.yaml

Update eg_freesurferpost-unstable_ingressed-fs.yaml

change tests/pytest_in_docker.sh

Update babs-status.rst

Update babs-status.rst

Update babs-status.rst

Update whats_new.md for version 0.5.3

Add BABS chaining to run 2 BIDS apps in a pipeline (#316)

Fix `babs submit --select` argument parsing (#312)

Update installation.rst (#309)

Update eg_aslprep-0-7-5.yaml (#304)

Fix coverage (#318)

edit nordic-fmriprep pipeline

add 0.5.4 release notes

Add `--throttle` option to `babs init` for SLURM array job throttling (#321)

Fix `babs merge` error when deleting merge_ds (#322)

Allow submission when all running jobs are in CG state (#332)

Allow resubmission of failed, non-running jobs when other jobs are running (#335)

Change `participant_job` to use `git sparse-checkout` (#337)

Use conda to install niworkflows and scipy instead of pip (#340)

Remove mentions of `babs submit --all` and `babs submit --job`(#341)

Fix `babs init --list_sub_file` (#345)

Fix writable check for NFS/ACL filesystems (#348)

Fix `babs merge` (#351)

add instruction to get containers

Do specify which branch to push (#352)

Fix test scripts to work on any machine (#346)

Custom analysis_path support: adding .babs directory for config/RIA storage