refactor: Improved handling of environment variables and secrets

changelogs/2026-01-29_17-26-50.md

@@ -17,4 +17,4 @@
 - No explicit bug fixes mentioned in the diff, but several changes improve the handling of environment variables and secrets, potentially fixing related issues.
 
 ### Removed
-- No features or functionality explicitly removed in the diff, but some configuration options and internal logic have been updated or simplified.
+- No features or functionality explicitly removed in the diff, but some configuration options and internal logic have been updated or simplified.

changelogs/2026-01-29_17-52-23.md

@@ -0,0 +1,12 @@
+# Changelog
+
+## [Unreleased]
+
+### Changed
+- Improved handling of environment variables and secrets, potentially fixing related issues.
+- Updated configuration options and internal logic for environment file generation.
+- Modified the `GIT_DIR` calculation to handle cases where the project name matches the remote directory name.
+- Changed the `create_env_file` function to only create directories without changing their permissions, avoiding potential permission errors.
+
+### Fixed
+- No explicit bug fixes mentioned, but several changes improve the handling of environment variables and secrets, potentially fixing related issues.