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OpenGATE / Gate Public

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[WIP] Multi-Channel Positronium Decay Source Model#763

Open

wkrzemien wants to merge 144 commits into

OpenGATE:developOpenGATE/Gate:developfrom

cis-imaging:positronium_source_rebasedcis-imaging/Gate:positronium_source_rebasedCopy head branch name to clipboard

Conversation Commits144 (144)Checks Files changed

Open

[WIP] Multi-Channel Positronium Decay Source Model#763
wkrzemien wants to merge 144 commits into
OpenGATE:developfrom
cis-imaging:positronium_source_rebased

Commits

Commits on May 8, 2026

Remove unused header
wkrzemien
committed
Remove commented code
wkrzemien
committed
Small refactoring of GateParaPositronium
wkrzemien
committed
Small refactorization of Positronium classes
wkrzemien
committed
Small refactorization of PositroniumDecayChannel
wkrzemien
committed
Remove unecessary & while passing basic types
wkrzemien
committed
Refactor ExtendedVSource
wkrzemien
committed
Just reformatting
wkrzemien
committed
Small improvement and formatting
wkrzemien
committed
Fix missing braces
wkrzemien
committed
Add smart pointers
wkrzemien
committed
Ordering the header list
wkrzemien
committed
Starting refactorization of Positronium Decay Model
wkrzemien
committed
Add stub of two unit tests that can be run with ctest
wkrzemien
committed
Remove unused includes
wkrzemien
committed
Extend the test for GatePositroniumDecayModel
wkrzemien
committed
Add new functionality to GetPositroniumDecayModel
wkrzemien
committed
Improve the test
wkrzemien
committed
Small refactoring
wkrzemien
committed
Extension of the decay model to include the excitation function
wkrzemien
committed
Remove obsolete comment
wkrzemien
committed
Add separate include file for positronium model parameters
wkrzemien
committed
Add commands to set positronium values from macros
wkrzemien
committed
Add separated GatePositronium class
wkrzemien
committed
Add non-copy and move logic to GatePositronium
wkrzemien
committed
Add tests of GatePositronium
wkrzemien
committed
Remove commented code
wkrzemien
committed
Add tests to ctest in CMakeLists.txt
wkrzemien
committed
Extract separated GateMiniPositroniumDecayModel
wkrzemien
committed
Extend GatePositronium test
wkrzemien
committed
Add explicit cast to GAtePositroniumDecayChannel in GatePositrionum
wkrzemien
committed
Small code fixes and formatting
wkrzemien
committed
Add a function generatePositroniumDecayParams()
wkrzemien
committed
Add missing include
wkrzemien
committed
Remove commented coded
wkrzemien
committed
Fix reading bool argument as true and false
wkrzemien
committed
Add separated class GatePositroniumDecayParamsGenerator
wkrzemien
committed
ParaPositronium and OrthoPositronium handling by Mini model
wkrzemien
committed
Remove commented include
wkrzemien
committed
Remove commented code
wkrzemien
committed
Remove repeated line
wkrzemien
committed
Fix missing argument passing in function generating params
wkrzemien
committed
Remove include to GatePositroniumDecayModel
wkrzemien
committed
Add test_GatePositroniumDecayParamsGenerator
wkrzemien
committed
Fix typo in SetPositroniumLifetimes function
wkrzemien
committed
Fix orthopositronium default lifetime to 142 ns
wkrzemien
committed
Add comment that the failure is not caught, cause GateError returns
wkrzemien
committed
Improve and unify tests of GatePositronium
wkrzemien
committed
Remove unused field
wkrzemien
committed
Rename SetEnableDeexcitation to SetEnablePromptGamma
wkrzemien
committed
Change fPromptPhoton to PromptGamma for consistency
wkrzemien
committed
Add checks if the number of parameters provides are equal
wkrzemien
committed
Remove setting seed
wkrzemien
committed
Remove Single Gamma model
wkrzemien
committed
Remove miniPositronium name of the model and leave only Ps model
wkrzemien
committed
Remove unused fields and function declarations
wkrzemien
committed
Implementing positronium helper into param generator / changing setting isPrompt into PromptProbability

kdulski
authored and
wkrzemien
committed
Fixing compile errors

kdulski
authored and
wkrzemien
committed
Small fixes for safe use

kdulski
authored and
wkrzemien
committed
Applying corrections

kdulski
authored and
wkrzemien
committed
Remove unused include headers
wkrzemien
committed
Fix naming of the variables.
wkrzemien
committed
Change to constexpt from float
wkrzemien
committed
Extract constants to namespace
wkrzemien
committed
Fix tests
wkrzemien
committed
Add GatePositroniumSource
wkrzemien
committed
Remove commented code
wkrzemien
committed
Small fixes in ParamsGenerator
wkrzemien
committed
Add handling prompt probabilities to GatePositroniumSourceMessenger
wkrzemien
committed
Add using prompt probabilities in DecayModel
wkrzemien
committed
Rename PositroniumDecayModel to GatePositroniumDecayModel
wkrzemien
committed
Fix name of the variable
wkrzemien
committed
Change the decay time of pPs to 0.1244 ns in constants
wkrzemien
committed
Fix error in the GatePositroniumDecayModel constructor
wkrzemien
committed
Fix and enable test for test_GatePositroniumDecayParamsGenerator
wkrzemien
committed
Update an outdated comment
wkrzemien
committed
Add test of GatePositronium that number of daughters are 3
wkrzemien
committed
Change name of namespace to be conformed with GATE
wkrzemien
committed
Add registration of new positronium source into GateMgr
wkrzemien
committed
Remove comment about docs
wkrzemien
committed
Remove unnecessary public keyword
wkrzemien
committed
Fix formatting
wkrzemien
committed
Fix formatting 2
wkrzemien
committed
Rename kpPs to kParaPs and koPs to kOrthoPs
wkrzemien
committed
Fix formatting
wkrzemien
committed
Remove behaveLikeVSource variable
wkrzemien
committed
Remove obsolete comments
wkrzemien
committed
Add missing _ in strings.
wkrzemien
committed
Add missing explanation to macro command
wkrzemien
committed
Explicit check for k3Gamma string
wkrzemien
committed
Add another _ in string
wkrzemien
committed
Add handling of command SetPositronInteractions
wkrzemien
committed
Add legacy version of GatePositroniumDecayModel
wkrzemien
committed
Add legacy ExtendedVSource
wkrzemien
committed
Remove obsolete headers from include
wkrzemien
committed
Add legacy GateExtendedVSource and Messenger cc
wkrzemien
committed
Remove obsolete GateExtendedVSource impl
wkrzemien
committed
Change to legacy version in GateSourceMgr
wkrzemien
committed
Remove setting seed
wkrzemien
committed
Add legacy GatePositroniumDecayModel
wkrzemien
committed
Add legacy code in CMakeLists
wkrzemien
committed
Move positronium code to legacy
wkrzemien
committed
feat: reduce GatePositroniumSource structure

MateuszBala
authored and
wkrzemien
committed
Adding test if the last argument in setting lifetime or energy is a unit

kdulski
authored and
wkrzemien
committed
Add definition of unitVal that will make the code compile :P
wkrzemien
committed
Uncomment messanger test
wkrzemien
committed
Add tests of PositroniumMessenger that passes in master
wkrzemien
committed
Add helper function to parse list of params with units
wkrzemien
committed
Update tests to use units for prompt energies and lifetimes
wkrzemien
committed
Remove unused code
wkrzemien
committed
Remove unused include
wkrzemien
committed
Remove unused variable
wkrzemien
committed
Add some basic error handling
wkrzemien
committed
Add parsing function as method
wkrzemien
committed
Remove commented code
wkrzemien
committed
Add const to the method
wkrzemien
committed
Fix formatting
wkrzemien
committed
feat: add decayInex propagation from decay to root file

MateuszBala
authored and
wkrzemien
committed
Add legacy versions of GateEmittedGammaInformation
wkrzemien
committed
Add missing GateEmittedGammaInformation.cc to legacy
wkrzemien
committed
Fix include by adding legacy.
wkrzemien
committed
Add function introducing vertex shift due to positron range
wkrzemien
committed
Add test of expected range
wkrzemien
committed
Add const instead of a magic number
wkrzemien
committed
Add handling of the positron range parameter by Messanger
wkrzemien
committed
Add tests of handling mean positron range macro commands
wkrzemien
committed
Fix wrong error message in the test
wkrzemien
committed
Fix error command in the test
wkrzemien
committed
Add handling of Electron Capture
wkrzemien
committed
Add following fix for electron capture case
wkrzemien
committed
Fix typo in the command name
wkrzemien
committed
Make positron capture as optional
wkrzemien
committed
Add cross-check of Electron Capture number of elements
wkrzemien
committed
Add a dedicated validation method to check generated parameters
wkrzemien
committed
Refactor the if conditions for clarity
wkrzemien
committed
Fix errors due to the unremoved git markers pointing to the conflict
wkrzemien
committed
Add headers and some generated description fo the classes
wkrzemien
committed
Fix the warning condition for EC and no prompt
wkrzemien
committed
Change return -1 from getPositorniumDecayIndex to return static_cast<int>(fractions.size()) - 1;
wkrzemien
committed
Add two tests that show two bug that are already fixed
wkrzemien
committed
fix: positronium source set correct source and decay type

MateuszBala
authored and
wkrzemien
committed
Remove unused decayModel arguments
wkrzemien
committed
feat: add multiphoton analysis

MateuszBala
authored and
wkrzemien
committed
format: remove tab

MateuszBala
authored and
wkrzemien
committed

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