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NovakLabOSU / FracFeedExtractor Public

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Feat/xgboost rework#50

Merged

SeanClay10 merged 32 commits intomainNovakLabOSU/FracFeedExtractor:mainfrom

feat/xgboost-reworkNovakLabOSU/FracFeedExtractor:feat/xgboost-reworkCopy head branch name to clipboard

Mar 15, 2026

Conversation Commits32 (32)Checks Files changed

Merged

Feat/xgboost rework#50
SeanClay10 merged 32 commits intomainfrom
feat/xgboost-rework

Commits

Commits on Feb 28, 2026

feat: cleans noisy features (doi, numbered references, figure captions, etc)
raymondcen
committed
fix: text cleaning left blank lines
raymondcen
committed
feat: temp pipeline for testing
raymondcen
committed
fix: section headers being removed
raymondcen
committed
use section priority rankings instead
raymondcen
committed
save cleaned text to folder
raymondcen
committed
use parargraph scoring
raymondcen
committed
update data for comparison later
raymondcen
committed

Commits on Mar 2, 2026

added another filter to drop entire paragraphs that contain irrelevant info
raymondcen
committed
update instructions on files
raymondcen
committed
added retry logic to retry null returns
raymondcen
committed
increased char and num-ctx limit on ollama
raymondcen
committed
drops paragraphs with no neg or pos signal
raymondcen
committed
added long doc test
raymondcen
committed
switched to qwen2.5:7b
raymondcen
committed
rewrote the system prompt to handle diverse study methods beyond stomach dissection
raymondcen
committed
reformat
raymondcen
committed

Commits on Mar 12, 2026

improved truncation
raymondcen
committed
added multi cpu processing option
raymondcen
committed
added --workers arg
raymondcen
committed
added sequqnetial pdf processing
raymondcen
committed
loads SpellChecker() only once
raymondcen
committed
xgboost trinaing set to gpu if available
raymondcen
committed
added bypass OCR because it froze workers
raymondcen
committed
--labels option to process all useful papers
raymondcen
committed
fixed name scanning in labels.json
raymondcen
committed

Commits on Mar 14, 2026

reformat
raymondcen
committed

Commits on Mar 15, 2026

Merge branch 'feat/improve-logging' into feat/xgboost-rework
raymondcen
committed
Merge remote-tracking branch 'origin/main' into feat/xgboost-rework
raymondcen
committed
Delete data/cleaned-text/llm_text/Adams_1989_20260312_115204.txt
raymondcen
authored
Delete data/cleaned-text/section_filter/Adams_1989_20260312_115204.txt
raymondcen
authored
deleted .txt files
raymondcen
committed

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