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Pull requests: NCATSTranslator/Babel

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Pull requests list

Add EMAPA
#742 opened Apr 30, 2026 by gaurav Collaborator • Draft
Unpin deprecated (unused) and pyoxigraph; add handler unit tests
#741 opened Apr 29, 2026 by gaurav Collaborator • Draft
8
Bump gitpython from 3.1.46 to 3.1.47 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#734 opened Apr 26, 2026 by dependabot Bot Loading…
Add config expansion rule checks
#728 opened Apr 22, 2026 by gaurav Collaborator • Draft
Bump lxml from 6.0.4 to 6.1.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#727 opened Apr 21, 2026 by dependabot Bot Loading…
Add near-end-to-end tests for write_compendium() label selection
#726 opened Apr 18, 2026 by gaurav Collaborator • Draft
5
Restrict label demotion to chemicals only
#725 opened Apr 18, 2026 by gaurav Collaborator • Draft
2
Export concords as Parquet files
#704 opened Apr 2, 2026 by gaurav Collaborator • Draft
Reduce peak RSS of cross-compendium DuckDB checks via two-pass queries
#703 opened Mar 30, 2026 by gaurav Collaborator Loading…
4
Bump pygments from 2.19.2 to 2.20.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#702 opened Mar 30, 2026 by dependabot Bot Loading…
Add conflation taxon report
#697 opened Mar 17, 2026 by gaurav Collaborator • Draft
1
Bump tornado from 6.5.4 to 6.5.5 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#691 opened Mar 12, 2026 by dependabot Bot Loading…
Add pipeline tests for UMLS
#690 opened Mar 9, 2026 by gaurav Collaborator Loading…
1 task
3
Add UMLS report generator
#683 opened Mar 5, 2026 by gaurav Collaborator • Draft
6
Add generic SQL report system for drop-in .sql report files
#671 opened Feb 24, 2026 by gaurav Collaborator • Draft
1 task
10
Exclude UMLS/MeSH chemical identifiers when preparing proteins
#670 opened Feb 23, 2026 by gaurav Collaborator • Draft
Add contributors
#615 opened Nov 7, 2025 by gaurav Collaborator • Draft
Improve Biolink type reporting
#589 opened Sep 25, 2025 by gaurav Collaborator • Draft
3 tasks
Feat/use rust for datacollect
#588 opened Sep 25, 2025 by gaurav Collaborator • Draft
1
Fix chembl issue 584
#585 opened Sep 23, 2025 by gaurav Collaborator • Draft
1
Bulk normalize
#564 opened Sep 9, 2025 by gaurav Collaborator • Draft
Add CLI normalizer
#503 opened Aug 28, 2025 by gaurav Collaborator • Draft
Moved UMLSToBiolinkTypeConverter into umls.py
#445 opened May 19, 2025 by gaurav Collaborator • Draft
Added a basic SSSOM to Concord converter
#439 opened May 1, 2025 by gaurav Collaborator • Draft
Add a comparator script
#381 opened Dec 16, 2024 by gaurav Collaborator Loading…
1
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