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@Murali-group

T. M. Murali's Research Group at Virginia Tech

Computational Systems Biology

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  1. Beeline Beeline Public

    BEELINE: evaluation of algorithms for gene regulatory network inference

    Python 208 59

  2. SARS-CoV-2-network-analysis SARS-CoV-2-network-analysis Public

    Software framework for analysis of SARS-CoV-2 molecular networks

    Jupyter Notebook 6 3

  3. GraphSpace GraphSpace Public

    The interactive graph sharing website.

    Python 35 49

  4. PathLinker PathLinker Public

    Connect the dots in networks.

    Python 20 10

  5. BoolODE BoolODE Public

    Git Repo for simulating Boolean Models

    Python 38 19

  6. SynVerse SynVerse Public

    Universal prediction of drug synergies

    Python 1 1

Repositories

Showing 10 of 25 repositories
  • Murali-group.github.io Public

    Website for our group

    Murali-group/Murali-group.github.io’s past year of commit activity
    HTML 1 MIT 0 0 3 Updated Mar 23, 2026
  • Beeline Public

    BEELINE: evaluation of algorithms for gene regulatory network inference

    Murali-group/Beeline’s past year of commit activity
    Python 208 GPL-3.0 59 38 19 Updated Mar 17, 2026
  • SynVerse Public

    Universal prediction of drug synergies

    Murali-group/SynVerse’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Jan 28, 2026
  • BoolODE Public

    Git Repo for simulating Boolean Models

    Murali-group/BoolODE’s past year of commit activity
    Python 38 GPL-3.0 19 9 8 Updated Nov 7, 2025
  • provenance-tracing Public
    Murali-group/provenance-tracing’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Oct 27, 2025
  • graph-split Public

    A module to split a graph in different ways (for deep learning applications)

    Murali-group/graph-split’s past year of commit activity
    Python 0 GPL-3.0 2 0 1 Updated Jun 30, 2025
  • ICoN Public

    Integration using Co-attention across Biological Networks

    Murali-group/ICoN’s past year of commit activity
    Python 1 GPL-3.0 2 0 0 Updated Feb 6, 2025
  • GraphSpace Public

    The interactive graph sharing website.

    Murali-group/GraphSpace’s past year of commit activity
    Python 35 GPL-2.0 49 82 (1 issue needs help) 25 Updated Aug 6, 2023
  • halp Public

    Hypergraph Algorithms Package

    Murali-group/halp’s past year of commit activity
    Python 102 GPL-3.0 23 4 3 Updated Jul 6, 2023
  • annotation_prediction Public

    Algorithms for predicting gene and protein annotations, e.g., to the GO and to the HPO.

    Murali-group/annotation_prediction’s past year of commit activity
    Python 2 GPL-3.0 3 0 2 Updated Jul 6, 2023
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