v0.2.0

• Added target generation function to produce a fasta file that can be used in downstream mapping analysis. Sequencing data generated by capture using a given panel design can be mapped to the target file to determine the presence of target organisms. i.e. using castanet
• Target generation is currently in development!!
• Added remove_outliers flag. This will cluster input sequences at a low cutoff (i.e. 80% identity) then remove sequences that are in singleton clusters. The rationale is that these are likely to be another species or possibly artificially modified (i.e. codon optimised). caution should be used if you have a sparse, diverse genome collection.

Full Changelog: v0.1.4...v0.2.0

v0.1.4

pangraph executable selection fix / refactor

fix eval errors

v0.1.3

Add --keeptmp argument and update version to 0.1.3

v0.1.2 minor updates

Update __init__.py

v0.1.1 Minor bugfixes and pangenome graph linear merge

Fixed error with design -h output

Added function to merge linear chains of pangenome graph nodes in the pangenome consensus fasta file. This reduces increased probes caused by more node edges.

Initial release

Initial Dampa release

v0.1.0 alpha initial release

for testing purposes