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  1. eSPAN-2 eSPAN-2 Public

    Analysis of nascent DNA synthesis

    R

  2. RepProfs RepProfs Public

    DNA Replication Profiling from CGS data.

    R

  3. ngsAnalyser1.1.4 ngsAnalyser1.1.4 Public

    Electron-Shiny standalone app to bring DNA sequencing data analysis to the point of your mouse-clicks!

    R 1

  4. SUPeSPAN-Analysis-Plotting-Pipeline SUPeSPAN-Analysis-Plotting-Pipeline Public

    SUPeSPAN Analysis is an R script for integrated analysis of strand-specific DNA replication. It combines supernatant sequencing (SUP) with IP-based eSPAN, processing Input, BrdU, ChIP, eSPAN, and S…

    R

  5. flip_test flip_test Public

    Minimal R tools for assessing strand-orientation bias around replication origins using 5′ ends, fragment midpoints, and Monte Carlo flip testing.

    R

  6. Sole-Soler_2026 Sole-Soler_2026 Public

    Smc5/6 couples ATPase-dependent translocation to sister chromatid disjunction during DNA replication

    R