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reorganizing embeddings folder (e.g., for TOL-10M): embeddings/ - txt_emb_bioclip.npy - txt_emb_biocap.npy - txt_emb_species.npy # also bioclip txt embedding - txt_emb_species.json
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Just FYI, it may be best to redo this due to the changes in #179. You can try rebasing, but that might not go well. |
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Incorporates newer models (BioCAP and BioCLIP 2.5 Huge) as "TreeOfLife Models" for full functionality, e.g.,
TreeOfLifeClassifieruse. This reworks the reading of text embeddings from the datasets, as incorporated in TreeOfLife-10M PR 13.This update still needs tests and is pending updates to the dataset repositories. Current tests that call the text embeddings will fail until those repos are updated.
Note that TreeOfLife-10M PR 13 and the corresponding BioCLIP update, will change the model weights used when calling the original BioCLIP model with
pybioclip. These updated weights are due to a taxonomic fix applied; please see the Hugging Face repositories for more details.This is further pending an update to TreeOfLife-200M to include
txt_emb_bioclip-2.npyandtxt_emb_bioclip-2.5-vith14.npyin theembeddings/directory.Closes #161.