Pinned Loading

1. TrimGalore TrimGalore Public

   Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data

   Perl 546 158

2. Bismark Bismark Public

   A tool to map bisulfite converted sequence reads and determine cytosine methylation states

   HTML 446 108

3. SNPsplit SNPsplit Public

   Allele-specific alignment sorting

   Perl 62 20

4. reStrainingOrder reStrainingOrder Public

   A little QC tool that attempts to predict the genotype of mouse samples used, based on prior knowledge of high-quality SNPs from the Mouse Genomes Project

   LilyPond 6 1

5. IMPLICON IMPLICON Public

   A processing guide for IMPLICON data (bisulfite amplicon data for imprinted loci)

   Python 3