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Failed downloads from uniprot or alphafold are not retried

Status: Open.

#39 In ElhabashyLab/3DClans;

· AronWichtner opened on Mar 13, 2026

Performance: Make USalign progress accounting incremental (avoid full-output recounting)

Status: Open.

#38 In ElhabashyLab/3DClans;

· AronWichtner opened on Mar 13, 2026

Performance: Remove Python row-wise loop hotspots in score and CLANS processing

Status: Open.

#37 In ElhabashyLab/3DClans;

· AronWichtner opened on Mar 13, 2026

Performance: Reduce per-structure mmCIF parse/write overhead for region extraction

Status: Open.

#36 In ElhabashyLab/3DClans;

· AronWichtner opened on Mar 13, 2026

Performance/Resilience: Add shared HTTP session, timeout, and retry policy for API clients

Status: Open.

#35 In ElhabashyLab/3DClans;

· AronWichtner opened on Mar 13, 2026

Performance: TSV path has sequential UniProt mapping and FASTA retrieval bottlenecks

Status: Open.

#34 In ElhabashyLab/3DClans;

· AronWichtner opened on Mar 13, 2026

cleaner API calls

Status: Open.

#33 In ElhabashyLab/3DClans;

· AronWichtner opened on Feb 22, 2026

integrate clustering with clans.jar into pipeline

Status: Open.

#32 In ElhabashyLab/3DClans;

· AronWichtner opened on Feb 22, 2026

Integrate generation of sequence bases clans files with BLAST

Status: Open.

#28 In ElhabashyLab/3DClans;

· AronWichtner opened on Feb 12, 2026