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@EI-CoreBioinformatics

EI-CoreBioinformatics

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  1. mikado mikado Public

    Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

    Python 108 19

  2. portcullis portcullis Public

    Splice junction analysis and filtering from BAM files

    C++ 41 9

  3. reat reat Public

    Robust Eukaryotic Annotation Toolkit

    Python 17 3

  4. minos minos Public

    The labyrinth king judges your gene models.

    Python 8

  5. annooddities annooddities Public

    AnnoOddities detects, identifies, and characterises oddities in genome annotations

    Python 2

  6. LiftClean LiftClean Public

    Lifton/Liftoff transcript filtering and comparison pipeline

    Python 1

Repositories

Showing 10 of 28 repositories
  • vizgen_data_transfer Public

    Vizgen Data Transfer

    EI-CoreBioinformatics/vizgen_data_transfer’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Mar 6, 2026
  • mikado Public

    Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

    EI-CoreBioinformatics/mikado’s past year of commit activity
    Python 108 LGPL-3.0 19 19 (1 issue needs help) 2 Updated Jan 30, 2026
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    EI-CoreBioinformatics/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,802 0 0 Updated Jan 30, 2026
  • LiftClean Public

    Lifton/Liftoff transcript filtering and comparison pipeline

    EI-CoreBioinformatics/LiftClean’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 28, 2026
  • annooddities Public

    AnnoOddities detects, identifies, and characterises oddities in genome annotations

    EI-CoreBioinformatics/annooddities’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 28, 2026
  • ENA_validation Public

    Script to pre-screen gff3 for validation

    EI-CoreBioinformatics/ENA_validation’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 15, 2025
  • EI-CoreBioinformatics/FusariumPanAnno’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Mar 12, 2025
  • reat Public

    Robust Eukaryotic Annotation Toolkit

    EI-CoreBioinformatics/reat’s past year of commit activity
    Python 17 MIT 3 6 (1 issue needs help) 1 Updated Feb 28, 2025
  • eirepeat Public

    eirepeat - EI Repeat Identification pipeline

    EI-CoreBioinformatics/eirepeat’s past year of commit activity
    Python 7 GPL-3.0 2 1 0 Updated Feb 28, 2025
  • eifunannot Public

    eifunannot - EI AHRD functional annotation pipeline

    EI-CoreBioinformatics/eifunannot’s past year of commit activity
    Python 1 GPL-3.0 0 1 0 Updated Feb 28, 2025

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