{2025.06}[foss/2025b] R-bundle-Bioconductor 3.22 by boegel · Pull Request #1414 · EESSI/software-layer

boegel · 2026-02-24T06:41:24Z

49 out of 185 required modules missing:

* GSL/2.8-GCC-14.3.0 (GSL-2.8-GCC-14.3.0.eb)
* Boost/1.88.0-GCC-14.3.0 (Boost-1.88.0-GCC-14.3.0.eb)
* NLopt/2.10.0-GCCcore-14.3.0 (NLopt-2.10.0-GCCcore-14.3.0.eb)
* snappy/1.2.2-GCCcore-14.3.0 (snappy-1.2.2-GCCcore-14.3.0.eb)
* RapidJSON/1.1.0-20250205-GCCcore-14.3.0 (RapidJSON-1.1.0-20250205-GCCcore-14.3.0.eb)
* libgit2/1.9.1-GCCcore-14.3.0 (libgit2-1.9.1-GCCcore-14.3.0.eb)
* UDUNITS/2.2.28-GCCcore-14.3.0 (UDUNITS-2.2.28-GCCcore-14.3.0.eb)
* utf8proc/2.10.0-GCCcore-14.3.0 (utf8proc-2.10.0-GCCcore-14.3.0.eb)
* googletest/1.17.0-GCCcore-14.3.0 (googletest-1.17.0-GCCcore-14.3.0.eb)
* GLPK/5.0-GCCcore-14.3.0 (GLPK-5.0-GCCcore-14.3.0.eb)
* gfbf/2025b (gfbf-2025b.eb)
* googlebenchmark/1.9.4-GCCcore-14.3.0 (googlebenchmark-1.9.4-GCCcore-14.3.0.eb)
* Catch2/2.13.10-GCCcore-14.3.0 (Catch2-2.13.10-GCCcore-14.3.0.eb)
* Zip/3.0-GCCcore-14.3.0 (Zip-3.0-GCCcore-14.3.0.eb)
* Ghostscript/10.05.1-GCCcore-14.3.0 (Ghostscript-10.05.1-GCCcore-14.3.0.eb)
* libsndfile/1.2.2-GCCcore-14.3.0 (libsndfile-1.2.2-GCCcore-14.3.0.eb)
* Tk/9.0.1-GCCcore-14.3.0 (Tk-9.0.1-GCCcore-14.3.0.eb)
* nodejs/22.17.1-GCCcore-14.3.0 (nodejs-22.17.1-GCCcore-14.3.0.eb)
* Abseil/20250512.1-GCCcore-14.3.0 (Abseil-20250512.1-GCCcore-14.3.0.eb)
* RE2/2025-07-22-GCCcore-14.3.0 (RE2-2025-07-22-GCCcore-14.3.0.eb)
* GEOS/3.13.1-GCC-14.3.0 (GEOS-3.13.1-GCC-14.3.0.eb)
* PostgreSQL/17.5-GCCcore-14.3.0 (PostgreSQL-17.5-GCCcore-14.3.0.eb)
* PCRE/8.45-GCCcore-14.3.0 (PCRE-8.45-GCCcore-14.3.0.eb)
* hypothesis/6.136.6-GCCcore-14.3.0 (hypothesis-6.136.6-GCCcore-14.3.0.eb)
* pybind11/3.0.0-GCC-14.3.0 (pybind11-3.0.0-GCC-14.3.0.eb)
* spin/0.14-GCCcore-14.3.0 (spin-0.14-GCCcore-14.3.0.eb)
* SciPy-bundle/2025.07-gfbf-2025b (SciPy-bundle-2025.07-gfbf-2025b.eb)
* Arrow/22.0.0-gfbf-2025b (Arrow-22.0.0-gfbf-2025b.eb)
* freeglut/3.6.0-GCCcore-14.3.0 (freeglut-3.6.0-GCCcore-14.3.0.eb)
* R/4.5.2-gfbf-2025b (R-4.5.2-gfbf-2025b.eb)
* nlohmann_json/3.12.0-GCCcore-14.3.0 (nlohmann_json-3.12.0-GCCcore-14.3.0.eb)
* PROJ/9.6.2-GCCcore-14.3.0 (PROJ-9.6.2-GCCcore-14.3.0.eb)
* libgeotiff/1.7.4-GCCcore-14.3.0 (libgeotiff-1.7.4-GCCcore-14.3.0.eb)
* libheif/1.20.2-GCCcore-14.3.0 (libheif-1.20.2-GCCcore-14.3.0.eb)
* JasPer/4.2.8-GCCcore-14.3.0 (JasPer-4.2.8-GCCcore-14.3.0.eb)
* ImageMagick/7.1.2-7-GCCcore-14.3.0 (ImageMagick-7.1.2-7-GCCcore-14.3.0.eb)
* Szip/2.1.1-GCCcore-14.3.0 (Szip-2.1.1-GCCcore-14.3.0.eb)
* CFITSIO/4.6.2-GCCcore-14.3.0 (CFITSIO-4.6.2-GCCcore-14.3.0.eb)
* HDF/4.3.1-GCCcore-14.3.0 (HDF-4.3.1-GCCcore-14.3.0.eb)
* json-c/0.18-GCCcore-14.3.0 (json-c-0.18-GCCcore-14.3.0.eb)
* Xerces-C++/3.3.0-GCCcore-14.3.0 (Xerces-C++-3.3.0-GCCcore-14.3.0.eb)
* Brunsli/0.1-GCCcore-14.3.0 (Brunsli-0.1-GCCcore-14.3.0.eb)
* Qhull/2020.2-GCCcore-14.3.0 (Qhull-2020.2-GCCcore-14.3.0.eb)
* LERC/4.0.0-GCCcore-14.3.0 (LERC-4.0.0-GCCcore-14.3.0.eb)
* netCDF/4.9.3-gompi-2025b (netCDF-4.9.3-gompi-2025b.eb)
* GDAL/3.11.3-foss-2025b (GDAL-3.11.3-foss-2025b.eb)
* R-bundle-CRAN/2025.11-foss-2025b (R-bundle-CRAN-2025.11-foss-2025b.eb)
* arrow-R/22.0.0-foss-2025b-R-4.5.2 (arrow-R-22.0.0-foss-2025b-R-4.5.2.eb)
* R-bundle-Bioconductor/3.22-foss-2025b-R-4.5.2 (R-bundle-Bioconductor-3.22-foss-2025b-R-4.5.2.eb)

boegel · 2026-02-24T06:41:37Z

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

eessi-bot-aws · 2026-02-24T06:41:44Z

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2026.02/pr_1414/134044

date	job status	comment
Feb 24 06:41:42 UTC 2026	submitted	job id `134044` awaits release by job manager
Feb 24 06:42:23 UTC 2026	released	job awaits launch by Slurm scheduler
Feb 24 06:48:28 UTC 2026	running	job `134044` is running
Feb 24 13:10:18 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-134044.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-x86_64-amd-zen2-17719384510.tar.zst` size: 420 MiB (441317855 bytes) entries: 49809 modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all `Abseil/20250512.1-GCCcore-14.3.0.lua` `Boost/1.88.0-GCC-14.3.0.lua` `Catch2/2.13.10-GCCcore-14.3.0.lua` `freeglut/3.6.0-GCCcore-14.3.0.lua` `GEOS/3.13.1-GCC-14.3.0.lua` `gfbf/2025b.lua` `Ghostscript/10.05.1-GCCcore-14.3.0.lua` `GLPK/5.0-GCCcore-14.3.0.lua` `googlebenchmark/1.9.4-GCCcore-14.3.0.lua` `googletest/1.17.0-GCCcore-14.3.0.lua` `GSL/2.8-GCC-14.3.0.lua` `hypothesis/6.136.6-GCCcore-14.3.0.lua` `ImageMagick/7.1.2-7-GCCcore-14.3.0.lua` `JasPer/4.2.8-GCCcore-14.3.0.lua` `libgit2/1.9.1-GCCcore-14.3.0.lua` `libheif/1.20.2-GCCcore-14.3.0.lua` `libsndfile/1.2.2-GCCcore-14.3.0.lua` `NLopt/2.10.0-GCCcore-14.3.0.lua` `nodejs/22.17.1-GCCcore-14.3.0.lua` `PCRE/8.45-GCCcore-14.3.0.lua` `PostgreSQL/17.5-GCCcore-14.3.0.lua` `pybind11/3.0.0-GCC-14.3.0.lua` `R/4.5.2-gfbf-2025b.lua` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0.lua` `RE2/2025-07-22-GCCcore-14.3.0.lua` `SciPy-bundle/2025.07-gfbf-2025b.lua` `snappy/1.2.2-GCCcore-14.3.0.lua` `spin/0.14-GCCcore-14.3.0.lua` `Tk/9.0.1-GCCcore-14.3.0.lua` `UDUNITS/2.2.28-GCCcore-14.3.0.lua` `utf8proc/2.10.0-GCCcore-14.3.0.lua` `Zip/3.0-GCCcore-14.3.0.lua` software under 2025.06/software/linux/x86_64/amd/zen2/software `Abseil/20250512.1-GCCcore-14.3.0` `Boost/1.88.0-GCC-14.3.0` `Catch2/2.13.10-GCCcore-14.3.0` `freeglut/3.6.0-GCCcore-14.3.0` `GEOS/3.13.1-GCC-14.3.0` `gfbf/2025b` `Ghostscript/10.05.1-GCCcore-14.3.0` `GLPK/5.0-GCCcore-14.3.0` `googlebenchmark/1.9.4-GCCcore-14.3.0` `googletest/1.17.0-GCCcore-14.3.0` `GSL/2.8-GCC-14.3.0` `hypothesis/6.136.6-GCCcore-14.3.0` `ImageMagick/7.1.2-7-GCCcore-14.3.0` `JasPer/4.2.8-GCCcore-14.3.0` `libgit2/1.9.1-GCCcore-14.3.0` `libheif/1.20.2-GCCcore-14.3.0` `libsndfile/1.2.2-GCCcore-14.3.0` `NLopt/2.10.0-GCCcore-14.3.0` `nodejs/22.17.1-GCCcore-14.3.0` `PCRE/8.45-GCCcore-14.3.0` `PostgreSQL/17.5-GCCcore-14.3.0` `pybind11/3.0.0-GCC-14.3.0` `R/4.5.2-gfbf-2025b` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0` `RE2/2025-07-22-GCCcore-14.3.0` `SciPy-bundle/2025.07-gfbf-2025b` `snappy/1.2.2-GCCcore-14.3.0` `spin/0.14-GCCcore-14.3.0` `Tk/9.0.1-GCCcore-14.3.0` `UDUNITS/2.2.28-GCCcore-14.3.0` `utf8proc/2.10.0-GCCcore-14.3.0` `Zip/3.0-GCCcore-14.3.0` reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod `Abseil/20250512.1-GCCcore-14.3.0/20260224_124953UTC` `Boost/1.88.0-GCC-14.3.0/20260224_070704UTC` `Catch2/2.13.10-GCCcore-14.3.0/20260224_101535UTC` `freeglut/3.6.0-GCCcore-14.3.0/20260224_115743UTC` `GEOS/3.13.1-GCC-14.3.0/20260224_122006UTC` `gfbf/2025b/20260224_071603UTC` `Ghostscript/10.05.1-GCCcore-14.3.0/20260224_085700UTC` `GLPK/5.0-GCCcore-14.3.0/20260224_084438UTC` `googlebenchmark/1.9.4-GCCcore-14.3.0/20260224_120622UTC` `googletest/1.17.0-GCCcore-14.3.0/20260224_115526UTC` `GSL/2.8-GCC-14.3.0/20260224_071556UTC` `hypothesis/6.136.6-GCCcore-14.3.0/20260224_084313UTC` `ImageMagick/7.1.2-7-GCCcore-14.3.0/20260224_124353UTC` `JasPer/4.2.8-GCCcore-14.3.0/20260224_122403UTC` `libgit2/1.9.1-GCCcore-14.3.0/20260224_071008UTC` `libheif/1.20.2-GCCcore-14.3.0/20260224_121046UTC` `libsndfile/1.2.2-GCCcore-14.3.0/20260224_083941UTC` `NLopt/2.10.0-GCCcore-14.3.0/20260224_083418UTC` `nodejs/22.17.1-GCCcore-14.3.0/20260224_101424UTC` `PCRE/8.45-GCCcore-14.3.0/20260224_125117UTC` `PostgreSQL/17.5-GCCcore-14.3.0/20260224_120410UTC` `pybind11/3.0.0-GCC-14.3.0/20260224_102138UTC` `R/4.5.2-gfbf-2025b/20260224_083150UTC` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0/20260224_084511UTC` `RE2/2025-07-22-GCCcore-14.3.0/20260224_130151UTC` `SciPy-bundle/2025.07-gfbf-2025b/20260224_115338UTC` `snappy/1.2.2-GCCcore-14.3.0/20260224_084248UTC` `spin/0.14-GCCcore-14.3.0/20260224_101445UTC` `Tk/9.0.1-GCCcore-14.3.0/20260224_071749UTC` `UDUNITS/2.2.28-GCCcore-14.3.0/20260224_084051UTC` `utf8proc/2.10.0-GCCcore-14.3.0/20260224_115404UTC` `Zip/3.0-GCCcore-14.3.0/20260224_071614UTC` other under 2025.06/software/linux/x86_64/amd/zen2 no other files in tarball
Feb 24 13:10:18 UTC 2026	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86-64-zen2+default P: latency: 1.33 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86-64-zen2+default P: latency: 2.06 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86-64-zen2+default P: latency: 0.21 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86-64-zen2+default P: bandwidth: 7799.11 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-134044.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot-jsc · 2026-02-24T06:41:45Z

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2026.02/pr_1414/14514025

date	job status	comment
Feb 24 06:41:43 UTC 2026	submitted	job id `14514025` awaits release by job manager
Feb 24 06:41:57 UTC 2026	released	job awaits launch by Slurm scheduler
Feb 24 06:43:08 UTC 2026	running	job `14514025` is running
Feb 24 08:59:43 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-14514025.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-nvidia-grace-17719229050.tar.gz` size: 434 MiB (455553255 bytes) entries: 49793 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all `Abseil/20250512.1-GCCcore-14.3.0.lua` `Boost/1.88.0-GCC-14.3.0.lua` `Catch2/2.13.10-GCCcore-14.3.0.lua` `freeglut/3.6.0-GCCcore-14.3.0.lua` `GEOS/3.13.1-GCC-14.3.0.lua` `gfbf/2025b.lua` `Ghostscript/10.05.1-GCCcore-14.3.0.lua` `GLPK/5.0-GCCcore-14.3.0.lua` `googlebenchmark/1.9.4-GCCcore-14.3.0.lua` `googletest/1.17.0-GCCcore-14.3.0.lua` `GSL/2.8-GCC-14.3.0.lua` `hypothesis/6.136.6-GCCcore-14.3.0.lua` `ImageMagick/7.1.2-7-GCCcore-14.3.0.lua` `JasPer/4.2.8-GCCcore-14.3.0.lua` `libgit2/1.9.1-GCCcore-14.3.0.lua` `libheif/1.20.2-GCCcore-14.3.0.lua` `libsndfile/1.2.2-GCCcore-14.3.0.lua` `NLopt/2.10.0-GCCcore-14.3.0.lua` `nodejs/22.17.1-GCCcore-14.3.0.lua` `PCRE/8.45-GCCcore-14.3.0.lua` `PostgreSQL/17.5-GCCcore-14.3.0.lua` `pybind11/3.0.0-GCC-14.3.0.lua` `R/4.5.2-gfbf-2025b.lua` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0.lua` `RE2/2025-07-22-GCCcore-14.3.0.lua` `SciPy-bundle/2025.07-gfbf-2025b.lua` `snappy/1.2.2-GCCcore-14.3.0.lua` `spin/0.14-GCCcore-14.3.0.lua` `Tk/9.0.1-GCCcore-14.3.0.lua` `UDUNITS/2.2.28-GCCcore-14.3.0.lua` `utf8proc/2.10.0-GCCcore-14.3.0.lua` `Zip/3.0-GCCcore-14.3.0.lua` software under 2025.06/software/linux/aarch64/nvidia/grace/software `Abseil/20250512.1-GCCcore-14.3.0` `Boost/1.88.0-GCC-14.3.0` `Catch2/2.13.10-GCCcore-14.3.0` `freeglut/3.6.0-GCCcore-14.3.0` `GEOS/3.13.1-GCC-14.3.0` `gfbf/2025b` `Ghostscript/10.05.1-GCCcore-14.3.0` `GLPK/5.0-GCCcore-14.3.0` `googlebenchmark/1.9.4-GCCcore-14.3.0` `googletest/1.17.0-GCCcore-14.3.0` `GSL/2.8-GCC-14.3.0` `hypothesis/6.136.6-GCCcore-14.3.0` `ImageMagick/7.1.2-7-GCCcore-14.3.0` `JasPer/4.2.8-GCCcore-14.3.0` `libgit2/1.9.1-GCCcore-14.3.0` `libheif/1.20.2-GCCcore-14.3.0` `libsndfile/1.2.2-GCCcore-14.3.0` `NLopt/2.10.0-GCCcore-14.3.0` `nodejs/22.17.1-GCCcore-14.3.0` `PCRE/8.45-GCCcore-14.3.0` `PostgreSQL/17.5-GCCcore-14.3.0` `pybind11/3.0.0-GCC-14.3.0` `R/4.5.2-gfbf-2025b` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0` `RE2/2025-07-22-GCCcore-14.3.0` `SciPy-bundle/2025.07-gfbf-2025b` `snappy/1.2.2-GCCcore-14.3.0` `spin/0.14-GCCcore-14.3.0` `Tk/9.0.1-GCCcore-14.3.0` `UDUNITS/2.2.28-GCCcore-14.3.0` `utf8proc/2.10.0-GCCcore-14.3.0` `Zip/3.0-GCCcore-14.3.0` reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod `Abseil/20250512.1-GCCcore-14.3.0/20260224_083728UTC` `Boost/1.88.0-GCC-14.3.0/20260224_065015UTC` `Catch2/2.13.10-GCCcore-14.3.0/20260224_074913UTC` `freeglut/3.6.0-GCCcore-14.3.0/20260224_082315UTC` `GEOS/3.13.1-GCC-14.3.0/20260224_082949UTC` `gfbf/2025b/20260224_065300UTC` `Ghostscript/10.05.1-GCCcore-14.3.0/20260224_072210UTC` `GLPK/5.0-GCCcore-14.3.0/20260224_071919UTC` `googlebenchmark/1.9.4-GCCcore-14.3.0/20260224_082544UTC` `googletest/1.17.0-GCCcore-14.3.0/20260224_082240UTC` `GSL/2.8-GCC-14.3.0/20260224_065258UTC` `hypothesis/6.136.6-GCCcore-14.3.0/20260224_071900UTC` `ImageMagick/7.1.2-7-GCCcore-14.3.0/20260224_083550UTC` `JasPer/4.2.8-GCCcore-14.3.0/20260224_083046UTC` `libgit2/1.9.1-GCCcore-14.3.0/20260224_065114UTC` `libheif/1.20.2-GCCcore-14.3.0/20260224_082725UTC` `libsndfile/1.2.2-GCCcore-14.3.0/20260224_071709UTC` `NLopt/2.10.0-GCCcore-14.3.0/20260224_071558UTC` `nodejs/22.17.1-GCCcore-14.3.0/20260224_074852UTC` `PCRE/8.45-GCCcore-14.3.0/20260224_083753UTC` `PostgreSQL/17.5-GCCcore-14.3.0/20260224_082459UTC` `pybind11/3.0.0-GCC-14.3.0/20260224_075301UTC` `R/4.5.2-gfbf-2025b/20260224_071519UTC` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0/20260224_071929UTC` `RE2/2025-07-22-GCCcore-14.3.0/20260224_084258UTC` `SciPy-bundle/2025.07-gfbf-2025b/20260224_082159UTC` `snappy/1.2.2-GCCcore-14.3.0/20260224_071801UTC` `spin/0.14-GCCcore-14.3.0/20260224_074900UTC` `Tk/9.0.1-GCCcore-14.3.0/20260224_065338UTC` `UDUNITS/2.2.28-GCCcore-14.3.0/20260224_071733UTC` `utf8proc/2.10.0-GCCcore-14.3.0/20260224_082206UTC` `Zip/3.0-GCCcore-14.3.0/20260224_065305UTC` other under 2025.06/software/linux/aarch64/nvidia/grace no other files in tarball
Feb 24 08:59:43 UTC 2026	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:aarch64-nvidia-grace+default P: latency: 2.48 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:aarch64-nvidia-grace+default P: latency: 6.25 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:aarch64-nvidia-grace+default P: latency: 0.25 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:aarch64-nvidia-grace+default P: bandwidth: 18612.49 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-14514025.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot-deucalion · 2026-02-24T06:41:46Z

New job on instance eessi-bot-deucalion for repository eessi.io-2025.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2026.02/pr_1414/987112

date	job status	comment
Feb 24 06:41:45 UTC 2026	submitted	job id `987112` awaits release by job manager
Feb 24 06:42:38 UTC 2026	released	job awaits launch by Slurm scheduler
Feb 24 06:43:43 UTC 2026	running	job `987112` is running
Feb 24 19:50:09 UTC 2026	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-987112.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.* created!` Artefacts `eessi-2025.06-software-linux-aarch64-a64fx-17719622290.tar.zst` size: 401 MiB (421500484 bytes) entries: 49793 modules under 2025.06/software/linux/aarch64/a64fx/modules/all `Abseil/20250512.1-GCCcore-14.3.0.lua` `Boost/1.88.0-GCC-14.3.0.lua` `Catch2/2.13.10-GCCcore-14.3.0.lua` `GEOS/3.13.1-GCC-14.3.0.lua` `GLPK/5.0-GCCcore-14.3.0.lua` `GSL/2.8-GCC-14.3.0.lua` `Ghostscript/10.05.1-GCCcore-14.3.0.lua` `ImageMagick/7.1.2-7-GCCcore-14.3.0.lua` `JasPer/4.2.8-GCCcore-14.3.0.lua` `NLopt/2.10.0-GCCcore-14.3.0.lua` `PCRE/8.45-GCCcore-14.3.0.lua` `PostgreSQL/17.5-GCCcore-14.3.0.lua` `R/4.5.2-gfbf-2025b.lua` `RE2/2025-07-22-GCCcore-14.3.0.lua` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0.lua` `SciPy-bundle/2025.07-gfbf-2025b.lua` `Tk/9.0.1-GCCcore-14.3.0.lua` `UDUNITS/2.2.28-GCCcore-14.3.0.lua` `Zip/3.0-GCCcore-14.3.0.lua` `freeglut/3.6.0-GCCcore-14.3.0.lua` `gfbf/2025b.lua` `googlebenchmark/1.9.4-GCCcore-14.3.0.lua` `googletest/1.17.0-GCCcore-14.3.0.lua` `hypothesis/6.136.6-GCCcore-14.3.0.lua` `libgit2/1.9.1-GCCcore-14.3.0.lua` `libheif/1.20.2-GCCcore-14.3.0.lua` `libsndfile/1.2.2-GCCcore-14.3.0.lua` `nodejs/22.17.1-GCCcore-14.3.0.lua` `pybind11/3.0.0-GCC-14.3.0.lua` `snappy/1.2.2-GCCcore-14.3.0.lua` `spin/0.14-GCCcore-14.3.0.lua` `utf8proc/2.10.0-GCCcore-14.3.0.lua` software under 2025.06/software/linux/aarch64/a64fx/software `Abseil/20250512.1-GCCcore-14.3.0` `Boost/1.88.0-GCC-14.3.0` `Catch2/2.13.10-GCCcore-14.3.0` `GEOS/3.13.1-GCC-14.3.0` `GLPK/5.0-GCCcore-14.3.0` `GSL/2.8-GCC-14.3.0` `Ghostscript/10.05.1-GCCcore-14.3.0` `ImageMagick/7.1.2-7-GCCcore-14.3.0` `JasPer/4.2.8-GCCcore-14.3.0` `NLopt/2.10.0-GCCcore-14.3.0` `PCRE/8.45-GCCcore-14.3.0` `PostgreSQL/17.5-GCCcore-14.3.0` `R/4.5.2-gfbf-2025b` `RE2/2025-07-22-GCCcore-14.3.0` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0` `SciPy-bundle/2025.07-gfbf-2025b` `Tk/9.0.1-GCCcore-14.3.0` `UDUNITS/2.2.28-GCCcore-14.3.0` `Zip/3.0-GCCcore-14.3.0` `freeglut/3.6.0-GCCcore-14.3.0` `gfbf/2025b` `googlebenchmark/1.9.4-GCCcore-14.3.0` `googletest/1.17.0-GCCcore-14.3.0` `hypothesis/6.136.6-GCCcore-14.3.0` `libgit2/1.9.1-GCCcore-14.3.0` `libheif/1.20.2-GCCcore-14.3.0` `libsndfile/1.2.2-GCCcore-14.3.0` `nodejs/22.17.1-GCCcore-14.3.0` `pybind11/3.0.0-GCC-14.3.0` `snappy/1.2.2-GCCcore-14.3.0` `spin/0.14-GCCcore-14.3.0` `utf8proc/2.10.0-GCCcore-14.3.0` reprod directories under 2025.06/software/linux/aarch64/a64fx/reprod `Abseil/20250512.1-GCCcore-14.3.0/20260224_185527UTC` `Boost/1.88.0-GCC-14.3.0/20260224_072846UTC` `Catch2/2.13.10-GCCcore-14.3.0/20260224_132845UTC` `GEOS/3.13.1-GCC-14.3.0/20260224_180803UTC` `GLPK/5.0-GCCcore-14.3.0/20260224_100229UTC` `GSL/2.8-GCC-14.3.0/20260224_074249UTC` `Ghostscript/10.05.1-GCCcore-14.3.0/20260224_102011UTC` `ImageMagick/7.1.2-7-GCCcore-14.3.0/20260224_184532UTC` `JasPer/4.2.8-GCCcore-14.3.0/20260224_181348UTC` `NLopt/2.10.0-GCCcore-14.3.0/20260224_094717UTC` `PCRE/8.45-GCCcore-14.3.0/20260224_185745UTC` `PostgreSQL/17.5-GCCcore-14.3.0/20260224_173619UTC` `R/4.5.2-gfbf-2025b/20260224_094336UTC` `RE2/2025-07-22-GCCcore-14.3.0/20260224_193504UTC` `RapidJSON/1.1.0-20250205-GCCcore-14.3.0/20260224_100333UTC` `SciPy-bundle/2025.07-gfbf-2025b/20260224_171817UTC` `Tk/9.0.1-GCCcore-14.3.0/20260224_074554UTC` `UDUNITS/2.2.28-GCCcore-14.3.0/20260224_095613UTC` `Zip/3.0-GCCcore-14.3.0/20260224_074326UTC` `freeglut/3.6.0-GCCcore-14.3.0/20260224_172538UTC` `gfbf/2025b/20260224_074302UTC` `googlebenchmark/1.9.4-GCCcore-14.3.0/20260224_174005UTC` `googletest/1.17.0-GCCcore-14.3.0/20260224_172226UTC` `hypothesis/6.136.6-GCCcore-14.3.0/20260224_100041UTC` `libgit2/1.9.1-GCCcore-14.3.0/20260224_073311UTC` `libheif/1.20.2-GCCcore-14.3.0/20260224_174950UTC` `libsndfile/1.2.2-GCCcore-14.3.0/20260224_095412UTC` `nodejs/22.17.1-GCCcore-14.3.0/20260224_132632UTC` `pybind11/3.0.0-GCC-14.3.0/20260224_134231UTC` `snappy/1.2.2-GCCcore-14.3.0/20260224_095853UTC` `spin/0.14-GCCcore-14.3.0/20260224_132714UTC` `utf8proc/2.10.0-GCCcore-14.3.0/20260224_171902UTC` other under 2025.06/software/linux/aarch64/a64fx no other files in tarball
Feb 24 19:50:09 UTC 2026	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:a64fx+default [Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed] [ SKIP ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:a64fx+default [Skipping test: nodes in this partition only have 30720 MiB memory available (per node) according to the current ReFrame configuration, but 49152 MiB is needed] [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:a64fx+default P: latency: 0.88 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:a64fx+default P: bandwidth: 8042.76 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 2/4 test case(s) from 4 check(s) (0 failure(s), 2 skipped, 0 aborted) Details ✅ job output file `slurm-987112.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

{2025.06}[foss/2025b] R-bundle-Bioconductor 3.22

71c9296

boegel added the 2025.06-software.eessi.io 2025.06 version of software.eessi.io label Feb 24, 2026

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

{2025.06}[foss/2025b] R-bundle-Bioconductor 3.22#1414

{2025.06}[foss/2025b] R-bundle-Bioconductor 3.22#1414
boegel wants to merge 1 commit intoEESSI:mainfrom
boegel:2025.06-R-bundle-Bioconductor-2025b

boegel commented Feb 24, 2026

Uh oh!

boegel commented Feb 24, 2026

Uh oh!

eessi-bot-aws bot commented Feb 24, 2026 •

edited

Loading

Uh oh!

eessi-bot-jsc bot commented Feb 24, 2026 •

edited

Loading

Uh oh!

eessi-bot-deucalion bot commented Feb 24, 2026 •

edited

Loading

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

1 participant

Conversation

boegel commented Feb 24, 2026

Uh oh!

boegel commented Feb 24, 2026

Uh oh!

eessi-bot-aws bot commented Feb 24, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot-jsc bot commented Feb 24, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot-deucalion bot commented Feb 24, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

1 participant

eessi-bot-aws bot commented Feb 24, 2026 •

edited

Loading

eessi-bot-jsc bot commented Feb 24, 2026 •

edited

Loading

eessi-bot-deucalion bot commented Feb 24, 2026 •

edited

Loading