feat: --markdown verify mode, viewBoxOriginY CropBox fix, and get command

docs/agents/docs-site-map.md

@@ -1,6 +1,6 @@
 ---
-generated_at: "2026-03-26T03:39:47Z"
-commit_sha: "80dfecd"
+generated_at: "2026-03-31T01:31:56Z"
+commit_sha: "4a2c083"
 page_count: 22
 tracked: 22
 stale: 0
@@ -17,107 +17,107 @@ stale: 0
 ### Curl Guide
 - **File**: `docs/curl-guide.md`
 - **Description**: Direct API usage with curl examples
-- **Staleness**: FRESH (12/15 commits since last update)
+- **Staleness**: FRESH (14/15 commits since last update)
 
 ### LangChain
 - **File**: `docs/frameworks/langchain.md`
 - **Description**: DeepCitation + LangChain: citation verification in your RAG pipeline
-- **Staleness**: FRESH (16/20 commits since last update)
+- **Staleness**: FRESH (0/20 commits since last update)
 
 ### Home
 - **File**: `docs/index.md`
 - **Description**: DeepCitation - Verify AI citations against source documents with visual proof
-- **Staleness**: FRESH (14/30 commits since last update)
+- **Staleness**: FRESH (21/30 commits since last update)
 
 ### SDK Reference
 - **File**: `docs/sdk-reference.md`
 - **Description**: TypeScript SDK client methods and utility functions
-- **Staleness**: FRESH (0/10 commits since last update)
+- **Staleness**: FRESH (4/10 commits since last update)
 
 ### Types
 - **File**: `docs/types.md`
 - **Description**: TypeScript interface definitions for DeepCitation
-- **Staleness**: FRESH (0/10 commits since last update)
+- **Staleness**: FRESH (6/10 commits since last update)
 
 ### Next.js App Router
 - **File**: `docs/frameworks/nextjs.md`
 - **Description**: DeepCitation + Next.js App Router: server components, streaming, and use client boundaries
-- **Staleness**: FRESH (0/15 commits since last update)
+- **Staleness**: FRESH (5/15 commits since last update)
 
 ### Getting Started
 - **File**: `docs/getting-started.md`
 - **Description**: Installation and quick start guide for DeepCitation
-- **Staleness**: FRESH (0/20 commits since last update)
+- **Staleness**: FRESH (8/20 commits since last update)
 
 ### Verification Statuses
 - **File**: `docs/verification-statuses.md`
 - **Description**: Understanding verification result statuses
-- **Staleness**: FRESH (4/10 commits since last update)
+- **Staleness**: FRESH (7/10 commits since last update)
 
 ### API Reference
 - **File**: `docs/api-reference.md`
 - **Description**: REST API endpoints for file preparation and citation verification
-- **Staleness**: FRESH (2/10 commits since last update)
+- **Staleness**: FRESH (4/10 commits since last update)
 
 ### Express.js
 - **File**: `docs/frameworks/express.md`
 - **Description**: DeepCitation + Express.js: citation verification in your Node.js API
-- **Staleness**: FRESH (0/20 commits since last update)
+- **Staleness**: FRESH (2/20 commits since last update)
 
 ### Vercel AI SDK
 - **File**: `docs/frameworks/vercel-ai-sdk.md`
 - **Description**: DeepCitation + Vercel AI SDK: streamText, useChat, and citation verification
-- **Staleness**: FRESH (0/15 commits since last update)
+- **Staleness**: FRESH (5/15 commits since last update)
 
 ### Prompts
 - **File**: `docs/prompts.md`
 - **Description**: How DeepCitation instructs LLMs to produce verifiable citations
-- **Staleness**: FRESH (1/20 commits since last update)
+- **Staleness**: FRESH (3/20 commits since last update)
 
 ### Code Examples
 - **File**: `docs/code-examples.md`
 - **Description**: SDK usage examples and integration patterns
-- **Staleness**: FRESH (16/20 commits since last update)
+- **Staleness**: FRESH (0/20 commits since last update)
 
 ### Python / FastAPI
 - **File**: `docs/frameworks/python.md`
 - **Description**: Using the DeepCitation REST API from Python
-- **Staleness**: FRESH (0/20 commits since last update)
+- **Staleness**: FRESH (2/20 commits since last update)
 
 ### Frameworks
 - **File**: `docs/frameworks/index.md`
 - **Description**: Framework-specific integration guides for DeepCitation
-- **Staleness**: FRESH (16/30 commits since last update)
+- **Staleness**: FRESH (19/30 commits since last update)
 
 ### Mastra
 - **File**: `docs/frameworks/mastra.md`
 - **Description**: Using DeepCitation with Mastra RAG pipelines
-- **Staleness**: FRESH (0/20 commits since last update)
+- **Staleness**: FRESH (2/20 commits since last update)
 
 ### Components
 - **File**: `docs/components.md`
 - **Description**: React CitationComponent documentation
-- **Staleness**: FRESH (0/15 commits since last update)
+- **Staleness**: FRESH (4/15 commits since last update)
 
 ### AG-UI
 - **File**: `docs/frameworks/agui.md`
 - **Description**: Using DeepCitation with the AG-UI protocol for SSE streaming
-- **Staleness**: FRESH (0/20 commits since last update)
+- **Staleness**: FRESH (2/20 commits since last update)
 
 ### Styling
 - **File**: `docs/styling.md`
 - **Description**: CSS customization options for CitationComponent
-- **Staleness**: FRESH (0/20 commits since last update)
+- **Staleness**: FRESH (1/20 commits since last update)
 
 ### Error Handling
 - **File**: `docs/error-handling.md`
 - **Description**: Error handling patterns for DeepCitation in production
-- **Staleness**: FRESH (9/15 commits since last update)
+- **Staleness**: FRESH (11/15 commits since last update)
 
 ### 404
 - **File**: `docs/404.md`
-- **Staleness**: FRESH (0/50 commits since last update)
+- **Staleness**: FRESH (9/50 commits since last update)
 
 ### Contributing
 - **File**: `docs/CONTRIBUTING.md`
-- **Staleness**: FRESH (0/50 commits since last update)
+- **Staleness**: FRESH (9/50 commits since last update)

docs/agents/repo-map.md

@@ -1,7 +1,7 @@
 ---
-generated_at: "2026-03-26T03:39:42Z"
-commit_sha: "80dfecd"
-commit_sha_full: "80dfecdc2584149d536c341ab2fad685b55b3a55"
+generated_at: "2026-03-31T01:31:51Z"
+commit_sha: "4a2c083"
+commit_sha_full: "4a2c08350a89e0f52651c45d31151a54289ed4ac"
 stale_after_commits: 30
 ---
 
@@ -30,6 +30,7 @@ Source
 src/  # Source files
   __tests__/  # Unit test files
   analysis/  # Search analysis: grouping, intent, narrative, and variation labels (pure functions, no React)
+  cli/  # CLI pipeline utilities: markdown-to-HTML converter for --markdown verify reports
   client/  # DeepCitation API client
   docs/  # Centralized code snippets for INTEGRATION.md
   drawing/  # Drawing/canvas utilities
@@ -43,9 +44,6 @@ src/  # Source files
     motion/  # Animation/motion utilities
     testing/  # React testing helpers
   rendering/  # Output renderers: Slack, GitHub, HTML, terminal, proofUrl
-    github/  # GitHub-flavored renderer
-    html/  # HTML renderer
-    slack/  # Slack renderer
     terminal/  # Terminal/ANSI renderer
     testing/  # Renderer test helpers
   types/  # Core TypeScript types (citation, verification, boxes, search, timing, diff)

docs/code-examples.md

@@ -4,7 +4,7 @@ title: Code Examples
 nav_order: 5
 description: "SDK usage examples and integration patterns"
 has_children: true
-commit_sha: "cc9c7aa"
+commit_sha: "4a2c083"
 stale_after_commits: 20
 watch_paths:
   - src/index.ts

docs/frameworks/langchain.md

@@ -4,7 +4,7 @@ title: LangChain
 parent: Frameworks
 nav_order: 1
 description: "DeepCitation + LangChain: citation verification in your RAG pipeline"
-commit_sha: "cc9c7aa"
+commit_sha: "4a2c083"
 stale_after_commits: 20
 watch_paths:
   - src/index.ts

scripts/refresh-agent-index.mjs

@@ -80,7 +80,9 @@ const DESCRIPTIONS = {
   "src/types": "Core TypeScript types (citation, verification, boxes, search, timing, diff)",
   "src/utils": "Security utilities: urlSafety, logSafety, objectSafety, regexSafety, sha, fileSafety",
   "src/analysis": "Search analysis: grouping, intent, narrative, and variation labels (pure functions, no React)",
+  "src/cli": "CLI pipeline utilities: markdown-to-HTML converter for --markdown verify reports",
   "src/docs": "Centralized code snippets for INTEGRATION.md",
+  "src/formatting": "Citation indicators and formatting utilities (getIndicator, toSuperscript)",
   "src/vanilla": "Framework-free popover bundle (CDN/vanilla JS runtime)",
   "src/drawing": "Drawing/canvas utilities",
   "src/__tests__": "Unit test files",