update generate_hub_baseline.R

[sbidari]

• moved library(epipredict) inside generate_hub_baseline.R (https://github.com/CDCgov/rsv-forecast-hub/actions/runs/17810156474/job/50631665229)
• ran devtools::document()

[codecov-commenter]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 14.65%. Comparing base (df077cd) to head (2307d6a).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #27   +/-   ##
=======================================
  Coverage   14.65%   14.65%           
=======================================
  Files           6        6           
  Lines         423      423           
=======================================
  Hits           62       62           
  Misses        361      361           

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[dylanhmorris]

Should qualify namespaces for the functions used from epipredict (epipredict::fn()), rather than having a library call within the function call.

I failed to notice the library(epipredict) invocation when I reviewed #11. I should have flagged it then; my apologies.

[sbidari]

Should qualify namespaces for the functions used from epipredict (epipredict::fn()), rather than having a library call within the function call.

I am using namespace qualifiers but the function epipredict::flusight_hub_formatter is referencing an object (state_census) that is not available unless you load the library separately. This is the line of the code with the issue

hubhelpr/R/generate_hub_baselines.R

Line 161 in 756f954

epipredict::flusight_hub_formatter(

[sbidari]

relevant error: https://github.com/CDCgov/rsv-forecast-hub/actions/runs/17810156474/job/50631665229

[dylanhmorris]

We should file an issue in epipredict; R functions should not expect you to have loaded the package to execute (the solution here will be to namespace qualify state_census

Since this is likely to be a simple fix, I think our best option option here is probably just to fork epipredict, fix it, and make a PR. We can depend on our own fork while we wait for the fix to land.

[dylanhmorris]

Working on this here: https://github.com/dylanhmorris/epipredict/tree/dylanhmorris-fix-flusight-hub-formatter

[dylanhmorris]

Opened cmu-delphi/epipredict#470

[dylanhmorris]

@sbidari my PR has now landed on dev, and it looks like it will be added to main shortly: cmu-delphi/epipredict#471

[dylanhmorris]

Thanks @sbidari!