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BioDataFuse / pyBiodatafuse Public

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Fixes before release 1.3.0#270

Merged

YojanaGadiya merged 25 commits intomainBioDataFuse/pyBiodatafuse:mainfrom

fixes_compoundwikiBioDataFuse/pyBiodatafuse:fixes_compoundwikiCopy head branch name to clipboard

Feb 3, 2026

Conversation Commits25 (25)Checks Files changed

Merged

Fixes before release 1.3.0#270
YojanaGadiya merged 25 commits intomainfrom
fixes_compoundwiki

Commits

Commits on Jan 26, 2026

Add compoundwiki modelling
jmillanacosta
committed
Ruff linting
jmillanacosta
committed
RDF refactor
jmillanacosta
committed

Commits on Jan 27, 2026

Fixes to RDF and CompoundWiki
jmillanacosta
committed
Fix neo4j connection and missing graph elements
jmillanacosta
committed
Set global logger to errors only
jmillanacosta
committed
Graph fixes and notebook run
jmillanacosta
committed

Commits on Feb 2, 2026

Many fixes
jmillanacosta
committed
Merge branch 'main' into fixes_compoundwiki + notebook run
jmillanacosta
committed
Add ignored file
jmillanacosta
committed
Notebook run
jmillanacosta
committed
Update manifest
jmillanacosta
committed
Show image for cytoscape
jmillanacosta
committed
Remove duplicated import and lint
jmillanacosta
committed
Add needed type annotation
jmillanacosta
committed
Typo
jmillanacosta
committed
Example notebook cleanup (#272)
YojanaGadiya
authored
Update shapes
jmillanacosta
authored
Add bdf_example.shacl file with SHACL definitions
jmillanacosta
authored
Update shapes (#273)
jmillanacosta
authored
RDF fixes for compound and gene
jmillanacosta
committed
Delete fixaoptestdata.py
jmillanacosta
authored
Revision changes
jmillanacosta
committed

Commits on Feb 3, 2026

move to constants
YojanaGadiya
committed
update docs
YojanaGadiya
committed

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