v2.1.0

New features

• blend_to_rgb / reduce_to_rgb: new prefix and suffix keyword parameters for custom score column naming conventions (e.g., prefix="msp-", suffix="_v2"). Defaults match existing "score-" behavior.
• RGBResult: new prefix and suffix fields so downstream functions auto-detect the naming convention.
• plot_embedding_interactive: new prefix and suffix keyword parameters for correct hover auto-extraction with custom column names. Defaults inherit from RGBResult when available.
• plot_scores: new prefix and suffix keyword parameters forwarded to all pipeline steps (scoring, color mapping, and interactive plotting).
• plot_scores: new one-step convenience function that wraps the full score → RGB → plot pipeline. Auto-selects blend_to_rgb for ≤ 3 gene sets and reduce_to_rgb(method="pca") for more.
• reduce_to_rgb: method now accepts a callable with signature (X, n_components, **kwargs) -> NDArray for one-off custom reductions. New component_prefix parameter overrides legend axis labels.
• score_gene_sets: emits UserWarning listing missing genes per gene set (genes not found in adata.var_names are imputed by pyUCell with worst-case rank).
• score_gene_sets: emits UserWarning when adata.X contains negative values (e.g., after sc.pp.scale()), since UCell is designed for non-negative counts.
• score_gene_sets: automatically copies read-only adata.X arrays to prevent crashes inside pyUCell (works around a pyUCell bug with read-only arrays after sc.pp.scale()).
• score_gene_sets: new clip_pct parameter for per-gene-set percentile clipping (winsorization). Accepts a single float for upper-tail clipping or a (lo, hi) tuple for both tails.
• score_gene_sets: new normalize parameter for per-gene-set min-max rescaling to [0, 1]. Applied after clipping.

Documentation

• Added color interpretation caveats for reduction mode in Pipeline Guide.
• Added inline callable example in Examples page.

v2.0.0

Uniformize inputs across the package's public functions

v1.0.6

Expand the documentation with more concrete pipeline steps and explanations

v1.0.5

Set up documentation for this project at https://AndreMacedo88.github.io/multiscoresplot/

v1.0.3

Fix issues with the legend of the "direct" methods not being plotted in the interactive plots.

v1.0.2

Fixed link to CI page

v1.0.1

Initial stable release with README.md properly written