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@AndersenLab

Andersen Lab

Johns Hopkins University

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  1. CAENDR CAENDR Public

    HTML 4 3

Repositories

Showing 10 of 201 repositories
  • nemascan-sims-nf Public

    Nextflow workflow for running GWA simulations

    AndersenLab/nemascan-sims-nf’s past year of commit activity
    R 0 0 3 0 Updated Mar 23, 2026
  • Ce_geneAnno-sh Public

    This is a repository for storing all scripts related to genome assembly, gene annotation, SV calling, GFF/FA file manipulation, functional enrichment analysis, gene set visualization, and syntelog decompression.

    AndersenLab/Ce_geneAnno-sh’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 20, 2026
  • andersenlab.github.io Public

    Andersen Lab Website

    AndersenLab/andersenlab.github.io’s past year of commit activity
    HTML 2 MIT 3 0 2 Updated Mar 18, 2026
  • assembly-nf Public

    Nextflow pipeline for hifiasm de novo assembly and sequencing quality control

    AndersenLab/assembly-nf’s past year of commit activity
    Nextflow 0 0 0 0 Updated Mar 17, 2026
  • geneAnno-nf Public

    This is a nextflow process that predicts gene models in Caenorhabditis de novo assembled genomes using BRAKER3. The input to this process is a TSV/TXT that contains three columns: species, strain, <pathToAssembly>. Column headers of "species", "strain", "asm_path" are required.

    AndersenLab/geneAnno-nf’s past year of commit activity
    Nextflow 0 0 0 0 Updated Mar 16, 2026
  • cv Public

    Andersen Curriculum Vitae

    AndersenLab/cv’s past year of commit activity
    0 1 0 0 Updated Mar 15, 2026
  • vertTrans_microbe_discovery Public

    C. elegans pathogen discovery through taxonomic classification from unaligned wild strains reads

    AndersenLab/vertTrans_microbe_discovery’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 11, 2026
  • caenorhabditis_colors Public

    Color codes for Caenorhabditis species and strains

    AndersenLab/caenorhabditis_colors’s past year of commit activity
    0 0 0 0 Updated Mar 8, 2026
  • NemaScan Public

    GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae

    AndersenLab/NemaScan’s past year of commit activity
    R 4 3 11 0 Updated Mar 2, 2026
  • CB_PopGen_HDR_MS Public

    scripts, figures, and tables for C. briggsae PopGen and HDR manuscript

    AndersenLab/CB_PopGen_HDR_MS’s past year of commit activity
    R 0 0 0 0 Updated Feb 26, 2026
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