library("IntAssoPlot")
IntRegionalPlot(chr=9,left=96507356,right=96537543,gtf=gtf1,association=aa,hapmap=hapmap,hapmap_ld=hapmap,threshold=5,leadsnp_size=2)
Hello. The above is the result after I use the code. After I replace the gtf file in the example, the result is the same as the example picture, which means there is no problem with the gtf file. Then, I replaced the hapmap file with hapmap_am368 in the example, and the following results appeared:
From this, I think there is something wrong with the hapmap file, but I can't tell the difference between the example file and mine. Do you have a solution please?
Looking forward to your reply,。
thank you.
library("IntAssoPlot")
IntRegionalPlot(chr=9,left=96507356,right=96537543,gtf=gtf1,association=aa,hapmap=hapmap,hapmap_ld=hapmap,threshold=5,leadsnp_size=2)
Hello. The above is the result after I use the code. After I replace the gtf file in the example, the result is the same as the example picture, which means there is no problem with the gtf file. Then, I replaced the hapmap file with hapmap_am368 in the example, and the following results appeared:
From this, I think there is something wrong with the hapmap file, but I can't tell the difference between the example file and mine. Do you have a solution please?
Looking forward to your reply,。
thank you.