The comparison that we did with Usher in the paper highlights some really interesting patterns in local parsimony that we could use to fine-tune, particularly wrt to the choice of sites to filter.
This notebook has some interesting plots which are definitely worth following up on if we want to improve sc2ts inference performance.
The comparison that we did with Usher in the paper highlights some really interesting patterns in local parsimony that we could use to fine-tune, particularly wrt to the choice of sites to filter.
This notebook has some interesting plots which are definitely worth following up on if we want to improve sc2ts inference performance.