Hi,
I have a graph G_m that looks like this:
IGRAPH baf9167 D--- 4 3 --
+ attr: last_mut (v/c), .orig_data (v/x), .tidygraph_node_index (v/x),
| label (v/c), id (v/n), node (v/c), GT (v/c), clone (v/n),
| .tidygraph_edge_index (e/x), .orig_data (e/x), label (e/c),
| from_label (e/c), to_label (e/c), from_node (e/c), to_node (e/c)
+ edges from baf9167:
[1] 1->2 2->3 2->4
When I do:
G_m %>% as_tbl_graph %>% mutate(rank = dfs_rank(root = 3))
Output:
# A tbl_graph: 4 nodes and 3 edges
#
# A rooted tree
#
# Node Data: 4 × 9 (active)
last_mut .orig_data .tidygraph_node_index label id node GT clone rank
<chr> <list> <list> <chr> <int> <chr> <chr> <int> <int>
1 "" <tibble> <int [609]> "" 1 NA "" 1 NA
2 "10a,6e,… <tibble> <int [2]> "10a… 2 Node… "10a… 2 NA
3 "10c,6a,… <tibble> <int [610]> "10c… 3 Node3 "10a… 3 NA
4 "15a,4d,… <tibble> <int [972]> "15a… 4 Node4 "10a… 4 NA
#
# Edge Data: 3 × 9
from to .tidygraph_edge_index .orig_data label from_label to_label
<int> <int> <list> <list> <chr> <chr> <chr>
1 1 2 <int [2]> <tibble [2 × 5]> ->10a,… "" 10a,6e,…
2 2 3 <int [2]> <tibble [2 × 5]> 10a,6e… "10a,6e,1… 10c,6a,…
3 2 4 <int [2]> <tibble [2 × 5]> 10a,6e… "10a,6e,1… 15a,4d,…
# ℹ 2 more variables: from_node <chr>, to_node <chr>
I think the correct output should be rank = 1 for row 3 (the root node itself should be accessible via dfs). If I use base igraph dfs
igraph::dfs(G_m, root = 3, unreachable = F)
I get:
$order
+ 1/4 vertex, from baf9167:
[1] 3
This wasn't an issue in tidygraph_1.2.3.
> sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.6 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3
LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3; LAPACK version 3.9.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: America/New_York
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] igraph_2.0.2 tidygraph_1.3.1 dplyr_1.1.3
loaded via a namespace (and not attached):
[1] tidyr_1.3.0 utf8_1.2.4 R6_2.5.1 tidyselect_1.2.0
[5] magrittr_2.0.3 glue_1.6.2 tibble_3.2.1 pkgconfig_2.0.3
[9] generics_0.1.3 lifecycle_1.0.3 cli_3.6.1 fansi_1.0.5
[13] vctrs_0.6.4 compiler_4.3.1 tools_4.3.1 purrr_1.0.2
[17] pillar_1.9.0 rlang_1.1.1
Hi,
I have a graph
G_mthat looks like this:When I do:
Output:
I think the correct output should be rank = 1 for row 3 (the root node itself should be accessible via dfs). If I use base igraph dfs
I get:
This wasn't an issue in
tidygraph_1.2.3.