From 66ce9aacecd418fcbbe582c270010588003364d8 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 00:43:12 +0700 Subject: [PATCH 01/28] feat: init project --- .editorconfig | 24 +++ .github/workflows/github_build.yml | 35 ++++ .github/workflows/github_ci.yml | 41 +++++ .gitignore | 126 +++++++++++++ .pre-commit-config.yaml | 61 +++++++ .python-version | 1 + .ruff.toml | 202 +++++++++++++++++++++ Makefile | 37 ++++ README.md | 20 +++ pyproject.toml | 18 ++ src/vecmodel/__init__.py | 5 + tests/__init__.py | 0 uv.lock | 279 +++++++++++++++++++++++++++++ 13 files changed, 849 insertions(+) create mode 100644 .editorconfig create mode 100644 .github/workflows/github_build.yml create mode 100644 .github/workflows/github_ci.yml create mode 100644 .gitignore create mode 100644 .pre-commit-config.yaml create mode 100644 .python-version create mode 100644 .ruff.toml create mode 100644 Makefile create mode 100644 pyproject.toml create mode 100644 src/vecmodel/__init__.py create mode 100644 tests/__init__.py create mode 100644 uv.lock diff --git a/.editorconfig b/.editorconfig new file mode 100644 index 0000000..0e8ffe9 --- /dev/null +++ b/.editorconfig @@ -0,0 +1,24 @@ +root = true + +[*] +charset = utf-8 +end_of_line = lf +indent_size = 2 +indent_style = space +insert_final_newline = true +trim_trailing_whitespace = true + +[*.md] +trim_trailing_whitespace = true + +[*.py] +indent_size = 4 + +[*.ipynb] +indent_size = 4 + +[Justfile] +indent_size = 4 + +[*Dockerfile*] +indent_size = 4 diff --git a/.github/workflows/github_build.yml b/.github/workflows/github_build.yml new file mode 100644 index 0000000..37b5566 --- /dev/null +++ b/.github/workflows/github_build.yml @@ -0,0 +1,35 @@ +name: Build and Publish to PyPI + +on: + push: + tags: + - "v*" # Trigger on version tags + +jobs: + needs: test + build-and-publish: + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@v3 + + - name: Set up Python + uses: actions/setup-python@v4 + with: + python-version: "3.12" + + - name: Install uv + run: | + curl -Ls https://astral.sh/uv/install.sh | sh + echo "$HOME/.cargo/bin" >> $GITHUB_PATH + + - name: Install dependencies + run: | + uv sync --all-packages + + - name: Build package + run: uv build --all-packages + + - name: Publish to PyPI + run: | + uv publish --username ${{ secrets.PYPI_USERNAME }} --password ${{ secrets.PYPI_PASSWORD }} diff --git a/.github/workflows/github_ci.yml b/.github/workflows/github_ci.yml new file mode 100644 index 0000000..11c22ca --- /dev/null +++ b/.github/workflows/github_ci.yml @@ -0,0 +1,41 @@ +name: VECMODEL-CI + +on: + push: + branches: ["main"] + pull_request: + branches: ["main"] + +jobs: + test: + name: Run Unit Tests + runs-on: ubuntu-latest + steps: + - name: Checkout code + uses: actions/checkout@v3 + + - name: Set up Python + uses: actions/setup-python@v4 + with: + python-version: "3.12" + + - name: Install uv + run: | + curl -Ls https://astral.sh/uv/install.sh | sh + echo "$HOME/.cargo/bin" >> $GITHUB_PATH + + - name: Install dependencies with uv + run: | + uv sync --all-packages + + - name: Run Unit Tests + run: | + source .venv/bin/activate + uv run pytest --cov=src --cov-report=xml --cov-report=html --cov-fail-under=50 + + - name: Upload coverage report + uses: codecov/codecov-action@v4 + with: + files: coverage.xml + flags: unittests + name: codecov-coverage diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..18c78d2 --- /dev/null +++ b/.gitignore @@ -0,0 +1,126 @@ +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +volumes/ +.vscode \ No newline at end of file diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..6dd367d --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,61 @@ +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v5.0.0 + hooks: + - id: check-added-large-files + args: [--maxkb=500, --enforce-all] + - id: check-ast + - id: check-case-conflict + - id: check-docstring-first + - id: check-executables-have-shebangs + - id: check-illegal-windows-names + - id: check-json + - id: check-merge-conflict + - id: check-shebang-scripts-are-executable + - id: check-symlinks + - id: check-toml + - id: check-yaml + - id: debug-statements + - id: destroyed-symlinks + - id: detect-private-key + - id: end-of-file-fixer + - id: mixed-line-ending + args: [--fix=lf] + - id: name-tests-test + args: [--pytest-test-first] + - id: pretty-format-json + args: [--autofix, --no-sort-keys] + - id: requirements-txt-fixer + - id: trailing-whitespace + + - repo: https://github.com/pre-commit/pygrep-hooks + rev: v1.10.0 + hooks: + - id: python-check-blanket-noqa + - id: python-check-blanket-type-ignore + - id: python-check-mock-methods + - id: python-no-eval + - id: python-no-log-warn + - id: python-use-type-annotations + - id: text-unicode-replacement-char + + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.7.3 + hooks: + - id: ruff + - id: ruff-format + + - repo: local + hooks: + - id: mypy + name: mypy + entry: uv run mypy + types: [python] + language: system + - id: pytest + name: pytest + entry: uv run pytest + types: [python] + language: system + pass_filenames: false + always_run: true diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..e4fba21 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.12 diff --git a/.ruff.toml b/.ruff.toml new file mode 100644 index 0000000..90701e7 --- /dev/null +++ b/.ruff.toml @@ -0,0 +1,202 @@ +cache-dir = ".cache/ruff" +extend-exclude = [".cache"] +fix = true +line-length = 80 +preview = true +src = [".", "src", "tests"] +target-version = "py312" + +[format] +docstring-code-format = true +line-ending = "lf" + +[lint] +select = [ + # pyflakes + "F", + # pycodestyle + "E", + "W", + # mccabe + "C90", + # isort + "I", + # pep8-naming + "N", + # pydocstyle + "D", + # pyupgrade + "UP", + # flake8-annotations + "ANN", + # flake8-async, + "ASYNC", + # flake8-bandit + "S", + # flake8-blind-except + "BLE", + # flake8-boolean-trap + "FBT", + # flake8-bugbear + "B", + # flake8-builtins + "A", + # flake8-commas + "COM", + # flake8-comprehensions + "C4", + # flake8-datetimez + "DTZ", + # flake8-debugger + "T10", + # flake8-django + # "DJ", + # flake8-errmsg + "EM", + # flake8-executable + "EXE", + # flake8-future-annotations + "FA", + # flake8-implicit-str-concat + "ISC", + # flake8-import-conventions + "ICN", + # flake8-logging + "LOG", + # flake8-logging-format + "G", + # flake8-no-pep420 + "INP", + # flake8-pie + "PIE", + # flake8-print + "T20", + # flake8-pyi + "PYI", + # flake8-pytest-style + "PT", + # flake8-quotes + "Q", + # flake8-raise + "RSE", + # flake8-return + "RET", + # flake8-self + "SLF", + # flake8-slots + "SLOT", + # flake8-simplify + "SIM", + # flake8-tidy-imports + "TID", + # flake8-type-checking + "TC", + # flake8-unused-arguments + "ARG", + # flake8-use-pathlib + "PTH", + # flake8-todos + "TD", + # flake8-fixme + "FIX", + # eradicate + "ERA", + # pandas-vet + "PD", + # pygrep-hooks + "PGH", + # Pylint + "PL", + # tryceratops + "TRY", + # flynt + "FLY", + # NumPy-specific rules + "NPY", + # "AIR", + # Perflint + "PERF", + # refurb + "FURB", + # pydoclint + "DOC", + # Ruff-specific rules + "RUF", +] +ignore = [ + # Missing docstring in public module + "D100", + # Missing docstring in public class + "D101", + # Missing docstring in public method + "D102", + # Missing docstring in public function + "D103", + # Missing docstring in public package + "D104", + # Missing docstring in magic method + "D105", + # Missing docstring in __init__ + "D107", + # Trailing comma missing + "COM812", + # Implicitly concatenated string literals on one line + "ISC001", +] +typing-modules = ["numpy.typing"] + +[lint.per-file-ignores] +"**/scripts/*" = [ + # `print` found + "T201", + # File {filename} is part of an implicit namespace package. Add an __init__.py. + "INP001", +] +"**/tests/**/*" = [ + # Missing docstring in public function + "D103", + # Use of assert detected + "S101", +] + + +[lint.flake8-import-conventions.extend-aliases] +scipy = "sp" + +[lint.flake8-pytest-style] +fixture-parentheses = true +mark-parentheses = true + +[lint.flake8-tidy-imports] +ban-relative-imports = "all" + +[lint.flake8-type-checking] +exempt-modules = ["typing", "typing_extensions"] +strict = true + +[lint.isort] +length-sort = true +lines-after-imports = 2 +required-imports = ["from __future__ import annotations"] +section-order = [ + "future", + "standard-library", + "third-party", + "testing", + "first-party", + "local-folder", +] +known-first-party = ['vecmodel'] + +[lint.isort.sections] +testing = ["pytest", "pytest_mock", "numpy.testing", "hypothesis"] + +[lint.mccabe] +max-complexity = 6 + + +[lint.pycodestyle] +max-doc-length = 80 + +[lint.pydocstyle] +convention = "google" diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..7c2e1e6 --- /dev/null +++ b/Makefile @@ -0,0 +1,37 @@ +.DEFAULT_GOAL := help + +PROJECT_SLUG := deep-serve + +COLOR :=\033[0;32m +NC :=\033[00m + + +.PHONY: uv ## Install uv, a virtual environment manager +uv: + curl -LsSf https://astral.sh/uv/install.sh | sh + +.PHONY: format ## Auto-format source files +format: + uv run ruff check --fix . + uv run ruff format . + +.PHONY: lint ## Run linter python source files +lint: + uv run ruff check . + uv run ruff format --check . + +.PHONY: typecheck ## Run type checks with mypy +typecheck: + uv run mypy . + +.PHONY: test ## Run all tests +test: + uv run pytest + +.PHONY: clean ## Clear local caches and build artifacts +clean: + rm -rf dist + rm -rf .cache + rm -rf .hypothesis + rm -rf `find . -name __pycache__` + rm -f `find . -type f -name '*.py[co]'` diff --git a/README.md b/README.md index 434b06f..67a1c08 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,22 @@ # vecmodel + +![CI](https://github.com/thkbit-labs/vecmodel/actions/workflows/github_ci.yml/badge.svg) +[![codecov](https://codecov.io/gh/thkbit-labs/vecmodel/branch/main/graph/badge.svg)](https://codecov.io/gh/thkbit-labs/vecmodel) + A model-based, ORM-inspired abstraction for vector databases. + +## Features + +- Define models for vector data +- CRUD operations for vector databases +- Easy integration with popular vector DBs +- Type-safe queries +- etc... + +## Installation + +To get started with `vecmodel`, simply install the package and its dependencies, then import the necessary modules: + +```bash +pip install vecmodel +``` diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..9db0565 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,18 @@ +[project] +name = "vecmodel" +version = "0.1.0" +description = "Add your description here" +readme = "README.md" +authors = [{ name = "HungLM1506", email = "leminhhung933@gmail.com" }] +requires-python = ">=3.12" +dependencies = [] + 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b/tests/test_dummy.py new file mode 100644 index 0000000..ca4655d --- /dev/null +++ b/tests/test_dummy.py @@ -0,0 +1,2 @@ +def test_addition(): + assert 1 + 1 == 2 From dc67b55dfbea973d6a816f77eabeaf93752602aa Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 00:53:16 +0700 Subject: [PATCH 04/28] feat: init project --- .github/workflows/github_ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/github_ci.yml b/.github/workflows/github_ci.yml index b4f8ef5..5f01d4c 100644 --- a/.github/workflows/github_ci.yml +++ b/.github/workflows/github_ci.yml @@ -26,7 +26,7 @@ jobs: - name: Install dependencies with uv run: | - uv sync --all-package00 + uv sync --all-packages - name: Run Unit Tests run: | From 996273059df6e3cf688dfde47e72e6f3dddedad1 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 00:57:59 +0700 Subject: [PATCH 05/28] feat: init project --- .github/workflows/github_build.yml | 2 +- 1 file changed, 1 insertion(+), 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Checkout code - uses: actions/checkout@v3 + uses: actions/checkout@v4 - name: Set up Python uses: actions/setup-python@v4 with: python-version: "3.12" - - name: Install uv - run: | - curl -Ls https://astral.sh/uv/install.sh | sh - echo "$HOME/.cargo/bin" >> $GITHUB_PATH + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v6 - name: Install dependencies with uv run: | uv sync --all-packages + - name: Run linter python source files + run: | + uv run ruff check . + uv run ruff format --check . + + - name: Run format source files + run: | + uv run ruff check --fix . + uv run ruff format . + - name: Run Unit Tests run: | - source .venv/bin/activate uv run pytest --cov=src --cov-report=xml --cov-report=html --cov-fail-under=0 - name: Upload coverage report @@ -39,3 +46,4 @@ jobs: files: coverage.xml flags: unittests name: codecov-coverage + token: ${{ secrets.CODECOV_TOKEN }} From 7afe4319f296c068fbeacaf4f0ae6e2c305f3d22 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 21:54:32 +0700 Subject: [PATCH 07/28] chore(ci): update github_build --- .github/workflows/github_build.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/github_build.yml b/.github/workflows/github_build.yml index 5f5ea76..6c7ecec 100644 --- a/.github/workflows/github_build.yml +++ b/.github/workflows/github_build.yml @@ -7,11 +7,11 @@ on: jobs: build-and-publish: - needs: test + needs: ci runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Set up Python uses: actions/setup-python@v4 From 8e6a707329d0608d1c77e54cd9c965a4715ade16 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 21:55:55 +0700 Subject: [PATCH 08/28] chore: update Makefile --- Makefile | 35 +++++++++++++++++++++-------------- 1 file changed, 21 insertions(+), 14 deletions(-) diff --git a/Makefile b/Makefile index 7c2e1e6..033ab05 100644 --- a/Makefile +++ b/Makefile @@ -1,35 +1,42 @@ .DEFAULT_GOAL := help 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Installing..." && curl -LsSf https://astral.sh/uv/install.sh | sh) + +.PHONY: format +format: ## Auto-format source files uv run ruff check --fix . uv run ruff format . -.PHONY: lint ## Run linter python source files -lint: +.PHONY: lint +lint: ## Run linter python source files uv run ruff check . uv run ruff format --check . -.PHONY: typecheck ## Run type checks with mypy -typecheck: +.PHONY: typecheck +typecheck: ## Run type checks with mypy uv run mypy . -.PHONY: test ## Run all tests -test: +.PHONY: test +test: ## Run all tests uv run pytest -.PHONY: clean ## Clear local caches and build artifacts -clean: +.PHONY: clean +clean: ## Clear local caches and build artifacts rm -rf dist rm -rf .cache rm -rf .hypothesis From 39f8be43d4efa4d30fa775448c73642c234b8d90 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 21:57:41 +0700 Subject: [PATCH 09/28] chore: refactor and update dependencies --- pyproject.toml | 20 +++-- uv.lock | 240 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url = "https://files.pythonhosted.org/packages/f3/40/b1c265d4b2b62b58576588510fc4d1fe60a86319c8de99fd8e9fec617d2c/virtualenv-20.31.2-py3-none-any.whl", hash = "sha256:36efd0d9650ee985f0cad72065001e66d49a6f24eb44d98980f630686243cf11", size = 6057982 }, +] From 0586c2e285078b4ac557e4e13921cc9a5d8f5965 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 21:58:23 +0700 Subject: [PATCH 10/28] chore(lint): update pre-commit hooks configuration --- .pre-commit-config.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 6dd367d..b2689f9 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v5.0.0 + rev: v5.2.0 hooks: - id: check-added-large-files args: [--maxkb=500, --enforce-all] @@ -29,7 +29,7 @@ repos: - id: trailing-whitespace - repo: https://github.com/pre-commit/pygrep-hooks - rev: v1.10.0 + rev: v1.12.0 hooks: - id: python-check-blanket-noqa - id: python-check-blanket-type-ignore @@ -40,7 +40,7 @@ repos: - id: text-unicode-replacement-char - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.7.3 + rev: v0.23.4 hooks: - id: ruff - id: ruff-format From a98c05b5d87392e9f53850f2a0fdfd10243b6343 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 21:58:47 +0700 Subject: [PATCH 11/28] chore: adjust .editorconfig for consistent formatting rules --- .editorconfig | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/.editorconfig b/.editorconfig index 0e8ffe9..5eb2186 100644 --- a/.editorconfig +++ b/.editorconfig @@ -14,10 +14,7 @@ trim_trailing_whitespace = true [*.py] indent_size = 4 -[*.ipynb] -indent_size = 4 - -[Justfile] +[Makefile] indent_size = 4 [*Dockerfile*] From 89b5f2474cb03ccdf5d697faebb4510b8cbf334e Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 21:59:10 +0700 Subject: [PATCH 12/28] docs: update README --- README.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/README.md b/README.md index 67a1c08..a59f89e 100644 --- a/README.md +++ b/README.md @@ -11,11 +11,10 @@ A model-based, ORM-inspired abstraction for vector databases. - CRUD operations for vector databases - Easy integration with popular vector DBs - Type-safe queries -- etc... ## Installation -To get started with `vecmodel`, simply install the package and its dependencies, then import the necessary modules: +To get started with `vecmodel`, install the package along with its dependencies, then import the necessary modules. ```bash pip install vecmodel From 563d53a0008112b7e20ace03aed7447771f6f99d Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 21:59:22 +0700 Subject: [PATCH 13/28] test: update dummy test for compatibility with new setup --- tests/test_dummy.py | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/tests/test_dummy.py b/tests/test_dummy.py index ca4655d..a8d0fb6 100644 --- a/tests/test_dummy.py +++ b/tests/test_dummy.py @@ -1,2 +1,5 @@ -def test_addition(): - assert 1 + 1 == 2 +from __future__ import annotations + + +def test_dummy() -> None: + pass From 48c7504046315d7993c870b25ba98abd7de8de89 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Tue, 15 Jul 2025 22:00:46 +0700 Subject: [PATCH 14/28] feat: init-project --- src/vecmodel/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/vecmodel/__init__.py b/src/vecmodel/__init__.py index 13c3eb2..e636c18 100644 --- a/src/vecmodel/__init__.py +++ b/src/vecmodel/__init__.py @@ -2,4 +2,4 @@ def main() -> None: - print("Hello from vecmodel!") + pass From 3ce9292f01f704df56dcb926f244ddeb443fd3de Mon Sep 17 00:00:00 2001 From: Le Minh Hung <85102936+HungLM1506@users.noreply.github.com> Date: Thu, 17 Jul 2025 01:56:23 +0000 Subject: [PATCH 15/28] chore(ci): update workflow --- .github/workflows/github_build.yml | 6 ++---- .github/workflows/github_ci.yml | 10 ++-------- 2 files changed, 4 insertions(+), 12 deletions(-) diff --git a/.github/workflows/github_build.yml b/.github/workflows/github_build.yml index 6c7ecec..518ca4b 100644 --- a/.github/workflows/github_build.yml +++ b/.github/workflows/github_build.yml @@ -18,10 +18,8 @@ jobs: with: python-version: "3.12" - - name: Install uv - run: | - curl -Ls https://astral.sh/uv/install.sh | sh - echo "$HOME/.cargo/bin" >> $GITHUB_PATH + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v6 - name: Install dependencies run: | diff --git a/.github/workflows/github_ci.yml b/.github/workflows/github_ci.yml index fc42cd0..d263834 100644 --- a/.github/workflows/github_ci.yml +++ b/.github/workflows/github_ci.yml @@ -14,7 +14,7 @@ jobs: - name: Checkout code uses: actions/checkout@v4 - - name: Set up Python + - name: Set up python uses: actions/setup-python@v4 with: python-version: "3.12" @@ -31,12 +31,7 @@ jobs: uv run ruff check . uv run ruff format --check . - - name: Run format source files - run: | - uv run ruff check --fix . - uv run ruff format . - - - name: Run Unit Tests + - name: Run unit tests run: | uv run pytest --cov=src --cov-report=xml --cov-report=html --cov-fail-under=0 @@ -45,5 +40,4 @@ jobs: with: files: coverage.xml flags: unittests - name: codecov-coverage token: ${{ secrets.CODECOV_TOKEN }} From 561f1fdd3a933d7ec77a8d99a5adfb4894af0731 Mon Sep 17 00:00:00 2001 From: Le Minh Hung <85102936+HungLM1506@users.noreply.github.com> Date: Thu, 17 Jul 2025 02:14:27 +0000 Subject: [PATCH 16/28] chore: update Makefile --- Makefile | 27 ++++++++++++++++++--------- 1 file changed, 18 insertions(+), 9 deletions(-) diff --git a/Makefile b/Makefile index 033ab05..aae5065 100644 --- a/Makefile +++ b/Makefile @@ -5,7 +5,6 @@ PROJECT_SLUG := vecmodel COLOR :=\033[0;32m NC :=\033[00m - .PHONY: help help: ## Show this help message @echo '' @@ -14,13 +13,19 @@ help: ## Show this help message @echo '' .PHONY: uv -uv: ## Install uv, a virtual environment manager - @command -v uv >/dev/null 2>&1 || (echo "uv not found. Installing..." && curl -LsSf https://astral.sh/uv/install.sh | sh) +uv: # Check uv + @command -v uv >/dev/null 2>&1 || \ + (echo "uv not found. Please install uv manually: https://astral.sh/uv/" && exit 1) + +.PHONY: install +install: ## Install package, dependencies, and pre-commit for local development + uv sync --all-packages + pre-commit install --install hooks -.PHONY: format -format: ## Auto-format source files - uv run ruff check --fix . - uv run ruff format . +.PHONY: upgrade +upgrade: ## Update all dependencies + uv lock --upgrade + pre-commit autoupdate .PHONY: lint lint: ## Run linter python source files @@ -28,12 +33,16 @@ lint: ## Run linter python source files uv run ruff format --check . .PHONY: typecheck -typecheck: ## Run type checks with mypy +typecheck: ## Perform type-checking uv run mypy . .PHONY: test test: ## Run all tests - uv run pytest + uv run pytest -m "not slow" + +.PHONY: build +build: ## Build package + uv build --all-packages .PHONY: clean clean: ## Clear local caches and build artifacts From 6f72c75ab9fb67d25cda050c81c1779e50ed93f9 Mon Sep 17 00:00:00 2001 From: Le Minh Hung <85102936+HungLM1506@users.noreply.github.com> Date: Thu, 17 Jul 2025 02:26:58 +0000 Subject: [PATCH 17/28] chore(lint): Update pre-commit hooks configuration --- .pre-commit-config.yaml | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index b2689f9..84cbb30 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -40,9 +40,12 @@ repos: - id: text-unicode-replacement-char - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.23.4 + # Ruff version. + rev: v0.12.3 hooks: - - id: ruff + # RUn the linter + - id: ruff-check + # Run the formatter - id: ruff-format - repo: local @@ -54,7 +57,7 @@ repos: language: system - id: pytest name: pytest - entry: uv run pytest + entry: uv run pytest -m "not slow" types: [python] language: system pass_filenames: false From ec8aa37f4c54767ff98652384234927ba10b5f52 Mon Sep 17 00:00:00 2001 From: Le Minh Hung <85102936+HungLM1506@users.noreply.github.com> Date: Thu, 17 Jul 2025 02:33:39 +0000 Subject: [PATCH 18/28] chore: update configuration ruff file --- .ruff.toml | 121 +---------------------------------------------------- 1 file changed, 1 insertion(+), 120 deletions(-) diff --git a/.ruff.toml b/.ruff.toml index 90701e7..7576d23 100644 --- a/.ruff.toml +++ b/.ruff.toml @@ -11,118 +11,7 @@ docstring-code-format = true line-ending = "lf" [lint] -select = [ - # pyflakes - "F", - # pycodestyle - "E", - "W", - # mccabe - "C90", - # isort - "I", - # pep8-naming - "N", - # pydocstyle - "D", - # pyupgrade - "UP", - # flake8-annotations - "ANN", - # flake8-async, - "ASYNC", - # flake8-bandit - "S", - # flake8-blind-except - "BLE", - # flake8-boolean-trap - "FBT", - # flake8-bugbear - "B", - # flake8-builtins - "A", - # flake8-commas - "COM", - # flake8-comprehensions - "C4", - # flake8-datetimez - "DTZ", - # flake8-debugger - "T10", - # flake8-django - # "DJ", - # flake8-errmsg - "EM", - # flake8-executable - "EXE", - # flake8-future-annotations - "FA", - # flake8-implicit-str-concat - "ISC", - # flake8-import-conventions - "ICN", - # flake8-logging - "LOG", - # flake8-logging-format - "G", - # flake8-no-pep420 - "INP", - # flake8-pie - "PIE", - # flake8-print - "T20", - # flake8-pyi - "PYI", - # flake8-pytest-style - "PT", - # flake8-quotes - "Q", - # flake8-raise - "RSE", - # flake8-return - "RET", - # flake8-self - "SLF", - # flake8-slots - "SLOT", - # flake8-simplify - "SIM", - # flake8-tidy-imports - "TID", - # flake8-type-checking - "TC", - # flake8-unused-arguments - "ARG", - # flake8-use-pathlib - "PTH", - # flake8-todos - "TD", - # flake8-fixme - "FIX", - # eradicate - "ERA", - # pandas-vet - "PD", - # pygrep-hooks - "PGH", - # Pylint - "PL", - # tryceratops - "TRY", - # flynt - "FLY", - # NumPy-specific rules - "NPY", - # "AIR", - # Perflint - "PERF", - # refurb - "FURB", - # pydoclint - "DOC", - # Ruff-specific rules - "RUF", -] +select = ["ALL"] ignore = [ # Missing docstring in public module "D100", @@ -152,13 +41,6 @@ typing-modules = ["numpy.typing"] # File {filename} is part of an implicit namespace package. Add an __init__.py. "INP001", ] -"**/tests/**/*" = [ - # Missing docstring in public function - "D103", - # Use of assert detected - "S101", -] - [lint.flake8-import-conventions.extend-aliases] scipy = "sp" @@ -194,7 +76,6 @@ testing = ["pytest", "pytest_mock", "numpy.testing", "hypothesis"] [lint.mccabe] max-complexity = 6 - [lint.pycodestyle] max-doc-length = 80 From 9acd2e1274f03f23b82cb8fddd64e169888d65d5 Mon Sep 17 00:00:00 2001 From: Le Minh Hung <85102936+HungLM1506@users.noreply.github.com> Date: Thu, 17 Jul 2025 02:44:05 +0000 Subject: [PATCH 19/28] feat: init-project --- src/vecmodel/__version__.py | 1 + 1 file changed, 1 insertion(+) create mode 100644 src/vecmodel/__version__.py diff --git a/src/vecmodel/__version__.py b/src/vecmodel/__version__.py new file mode 100644 index 0000000..8e3abda --- /dev/null +++ b/src/vecmodel/__version__.py @@ -0,0 +1 @@ +__version__= "0.0.0" \ No newline at end of file From 024dcc4c4d3334c191a61a626ebc4d4297b2251e Mon Sep 17 00:00:00 2001 From: Le Minh Hung <85102936+HungLM1506@users.noreply.github.com> Date: Thu, 17 Jul 2025 02:46:48 +0000 Subject: [PATCH 20/28] feat: init-project --- src/vecmodel/__init__.py | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/src/vecmodel/__init__.py b/src/vecmodel/__init__.py index e636c18..e9c9ef4 100644 --- a/src/vecmodel/__init__.py +++ b/src/vecmodel/__init__.py @@ -1,5 +1 @@ -from __future__ import annotations - - -def main() -> None: - pass +from .__version__ import __version__ \ No newline at end of file From ed2f711505ad63e651204e918a62f4ee76600b21 Mon Sep 17 00:00:00 2001 From: Le Minh Hung <85102936+HungLM1506@users.noreply.github.com> Date: Thu, 17 Jul 2025 02:49:43 +0000 Subject: [PATCH 21/28] chore: refactor and update dependencies --- pyproject.toml | 2 +- uv.lock | 275 +++++++++++++++++++++++++------------------------ 2 files changed, 139 insertions(+), 138 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 6f79d82..ffeb806 100644 --- a/pyproject.toml +++ 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Please install uv manually: https://astral.sh/uv/" && exit 1) + (echo "uv not found. Please install uv manually: https://astral.sh/uv/") .PHONY: install install: ## Install package, dependencies, and pre-commit for local development From 88c6091ce4d1de475a2fff8ff3c6857103455f97 Mon Sep 17 00:00:00 2001 From: Le Minh Hung <85102936+HungLM1506@users.noreply.github.com> Date: Thu, 17 Jul 2025 02:52:33 +0000 Subject: [PATCH 23/28] feat: init-project --- src/vecmodel/__init__.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/vecmodel/__init__.py b/src/vecmodel/__init__.py index e9c9ef4..f435f33 100644 --- a/src/vecmodel/__init__.py +++ b/src/vecmodel/__init__.py @@ -1 +1,3 @@ -from .__version__ import __version__ \ No newline at end of file +from __future__ import annotations + +from vecmodel.__version__ import __version__ From 97cbfe7bcc168d462cbc6032296fae88faca1d8e Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Sat, 19 Jul 2025 19:07:20 +0700 Subject: [PATCH 24/28] feat: init-project --- .ruff.toml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.ruff.toml b/.ruff.toml index 7576d23..16f7682 100644 --- a/.ruff.toml +++ b/.ruff.toml @@ -31,6 +31,8 @@ ignore = [ "COM812", # Implicitly concatenated string literals on one line "ISC001", + # Specifically disables the missing copyright notice rule + "CPY001", ] typing-modules = ["numpy.typing"] @@ -71,7 +73,7 @@ section-order = [ known-first-party = ['vecmodel'] [lint.isort.sections] -testing = ["pytest", "pytest_mock", "numpy.testing", "hypothesis"] +testing = ["pytest", "pytest_mock", "hypothesis"] [lint.mccabe] max-complexity = 6 From 4d209ddf5c79832ee0be4197535e96e480a38c8d Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Sat, 19 Jul 2025 19:07:37 +0700 Subject: [PATCH 25/28] feat: init-project --- src/vecmodel/__init__.py | 3 +++ src/vecmodel/__version__.py | 5 ++++- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/src/vecmodel/__init__.py b/src/vecmodel/__init__.py index f435f33..506e838 100644 --- a/src/vecmodel/__init__.py +++ b/src/vecmodel/__init__.py @@ -1,3 +1,6 @@ from __future__ import annotations from vecmodel.__version__ import __version__ + + +__all__ = ["__version__"] diff --git a/src/vecmodel/__version__.py b/src/vecmodel/__version__.py index 8e3abda..87b7361 100644 --- a/src/vecmodel/__version__.py +++ b/src/vecmodel/__version__.py @@ -1 +1,4 @@ -__version__= "0.0.0" \ No newline at end of file +from __future__ import annotations + + +__version__ = "0.0.0" From 8c8982ca580bb14b3f5474eee2db2773913fd222 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Sat, 19 Jul 2025 19:25:29 +0700 Subject: [PATCH 26/28] feat: init-project --- .gitignore | 1 - .vscode/extensions.json | 12 ++++++++++++ .vscode/settings.json | 27 +++++++++++++++++++++++++++ Makefile | 2 +- 4 files changed, 40 insertions(+), 2 deletions(-) create mode 100644 .vscode/extensions.json create mode 100644 .vscode/settings.json diff --git a/.gitignore b/.gitignore index 18c78d2..267eb96 100644 --- a/.gitignore +++ b/.gitignore @@ -123,4 +123,3 @@ dmypy.json .pyre/ volumes/ -.vscode \ No newline at end of file diff --git a/.vscode/extensions.json b/.vscode/extensions.json new file mode 100644 index 0000000..3983cf9 --- /dev/null +++ b/.vscode/extensions.json @@ -0,0 +1,12 @@ +{ + "recommendations": [ + "EditorConfig.EditorConfig", + "tamasfe.even-better-toml", + "ms-python.mypy-type-checker", + "esbenp.prettier-vscode", + "ms-python.vscode-pylance", + "ms-python.python", + "charliermarsh.ruff", + "nefrob.vscode-just-syntax" + ] +} diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 0000000..70db4e4 --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,27 @@ +{ + "[python]": { + "editor.defaultFormatter": "charliermarsh.ruff" + }, + "[toml]": { + "editor.defaultFormatter": "tamasfe.even-better-toml" + }, + "editor.codeActionsOnSave": { + "source.fixAll": "explicit", + "source.organizeImports": "explicit" + }, + "editor.defaultFormatter": "esbenp.prettier-vscode", + "editor.formatOnSave": true, + "evenBetterToml.formatter.allowedBlankLines": 1, + "evenBetterToml.formatter.columnWidth": 90, + "files.autoSave": "onFocusChange", + "files.eol": "\n", + "files.exclude": { + "**/__pycache__": true + }, + "files.trimFinalNewlines": true, + "files.trimTrailingWhitespace": true, + "mypy-type-checker.importStrategy": "fromEnvironment", + "mypy-type-checker.preferDaemon": true, + "prettier.printWidth": 90, + "prettier.proseWrap": "always" +} diff --git a/Makefile b/Makefile index 70ae36e..28219b0 100644 --- a/Makefile +++ b/Makefile @@ -13,7 +13,7 @@ help: ## Show this help message @echo '' .PHONY: uv -uv: # Check uv +uv: # Check uv @command -v uv >/dev/null 2>&1 || \ (echo "uv not found. Please install uv manually: https://astral.sh/uv/") From a462bb26360664589ccec489e1c0cdb950e7c2ff Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Sun, 20 Jul 2025 23:27:04 +0700 Subject: [PATCH 27/28] feat: init-project --- .editorconfig | 3 ++- .pre-commit-config.yaml | 3 --- .ruff.toml | 2 +- 3 files changed, 3 insertions(+), 5 deletions(-) diff --git a/.editorconfig b/.editorconfig index 5eb2186..02e6d88 100644 --- a/.editorconfig +++ b/.editorconfig @@ -12,10 +12,11 @@ trim_trailing_whitespace = true trim_trailing_whitespace = true [*.py] +indent_style = space indent_size = 4 [Makefile] -indent_size = 4 +indent_style = tab [*Dockerfile*] indent_size = 4 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 84cbb30..1a52656 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -40,12 +40,9 @@ repos: - id: text-unicode-replacement-char - repo: https://github.com/astral-sh/ruff-pre-commit - # Ruff version. rev: v0.12.3 hooks: - # RUn the linter - id: ruff-check - # Run the formatter - id: ruff-format - repo: local diff --git a/.ruff.toml b/.ruff.toml index 16f7682..7c2f21a 100644 --- a/.ruff.toml +++ b/.ruff.toml @@ -31,7 +31,7 @@ ignore = [ "COM812", # Implicitly concatenated string literals on one line "ISC001", - # Specifically disables the missing copyright notice rule + # Missing copyright notice at top of file "CPY001", ] typing-modules = ["numpy.typing"] From 7ff9b974688255f1ff425cc8b384e6bd6edad872 Mon Sep 17 00:00:00 2001 From: HungLM1506 Date: Mon, 21 Jul 2025 23:23:27 +0700 Subject: [PATCH 28/28] chore: update ci --- .github/workflows/github_build.yml | 11 ++++------- .github/workflows/github_ci.yml | 10 +++------- 2 files changed, 7 insertions(+), 14 deletions(-) diff --git a/.github/workflows/github_build.yml b/.github/workflows/github_build.yml index 518ca4b..66c9b0d 100644 --- a/.github/workflows/github_build.yml +++ b/.github/workflows/github_build.yml @@ -9,17 +9,14 @@ jobs: build-and-publish: needs: ci runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 - - - name: Set up Python - uses: actions/setup-python@v4 - with: - python-version: "3.12" + - name: Checkout code + uses: actions/checkout@v4 - name: Install the latest version of uv uses: astral-sh/setup-uv@v6 + with: + python-version: "3.12" - name: Install dependencies run: | diff --git a/.github/workflows/github_ci.yml b/.github/workflows/github_ci.yml index d263834..a7abfcc 100644 --- a/.github/workflows/github_ci.yml +++ b/.github/workflows/github_ci.yml @@ -14,13 +14,10 @@ jobs: - name: Checkout code uses: actions/checkout@v4 - - name: Set up python - uses: actions/setup-python@v4 - with: - python-version: "3.12" - - name: Install the latest version of uv uses: astral-sh/setup-uv@v6 + with: + python-version: "3.12" - name: Install dependencies with uv run: | @@ -28,8 +25,7 @@ jobs: - name: Run linter python source files run: | - uv run ruff check . - uv run ruff format --check . + make lint - name: Run unit tests run: |