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‎content/en/about/project.md‎

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| riboseq | RIBO-Seq Workflow Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/systemPipeRIBOseq.html), [GitHub](https://github.com/systemPipeR/sprwf-riboseq) |
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| chipseq | ChIP-Seq Workflow Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/systemPipeChIPseq.html), [GitHub](https://github.com/systemPipeR/sprwf-chipseq) |
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| varseq | VAR-Seq Workflow Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/systemPipeVARseq.html), [GitHub](https://github.com/systemPipeR/sprwf-varseq) |
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| SPblast | BLAST Workflow Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/SPblast.html), [GitHub](https://github.com/systemPipeR/sprwf-spblast) |
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| SPcheminfo | Cheminformatics Drug Similarity Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/SPcheminfo.html), [GitHub](https://github.com/systemPipeR/sprwf-spcheminfo) |
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| SPscrna | Basic Single-Cell Workflow Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/SPscrna.html), [GitHub](https://github.com/systemPipeR/sprwf-spscrna) |
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| blast (SPblast) | BLAST Workflow Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/SPblast.html), [GitHub](https://github.com/systemPipeR/sprwf-spblast) |
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| cheminfo (SPcheminfo) | Cheminformatics Drug Similarity Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/SPcheminfo.html), [GitHub](https://github.com/systemPipeR/sprwf-spcheminfo) |
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| scrna (SPscrna) | Basic Single-Cell Workflow Template | [Bioc](https://www.bioconductor.org/packages/devel/data/experiment/vignettes/systemPipeRdata/inst/doc/SPscrna.html), [GitHub](https://github.com/systemPipeR/sprwf-spscrna) |
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Shared components used by some or all of the above workflows are given in this table. The `param` component is required for all workflows, while `data` is only used by some of them.
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‎public/404.html‎

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<meta property="og:description" content="Acknowledgement This project is funded by awards from the National Science Foundation (ABI-1661152{blk}), and the National Institute on Aging of the National Institutes of Health (U19AG023122{blk})." />
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<meta property="og:description" content="Thomas Girke{blk}, Ph.D. Professor of Bioinformatics Director of HPC Center (HPCC{blk}) Institute for Integrative Genome Biology (IIGB{blk}) Department of Botany and Plant Sciences (BPSC{blk}) 1207F Genomics Building University of California, Riverside (UCR{blk}) CA 92521 Email: thomas.girke@ucr.edu
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Daniela Cassol{blk}, Ph.D. Postdoctoral Researcher Department of Botany and Plant Sciences (BPSC{blk}) 1207E Genomics Building University of California, Riverside (UCR{blk}) CA 92521 Email: danicassol@gmail.com" />
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<meta property="og:description" content="Overview The systemPipe project provides a suite of R/Bioconductor packages for designing, building, and executing end-to-end data analysis workflows on local machines and high-performance computing (HPC) systems, while simultaneously generating publication-quality analysis reports.
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<meta property="og:description" content="Publications of this project Journal publications Duan Y, Evans DS, Miller RA, Schork NJ, Cummings SR, Girke T. signatureSearch: environment for gene expression signature searching and functional interpretation. Nucleic Acids Res [Internet]. 2020 Dec 2;48(21):e124. Available from: http://dx.doi.org/10.1093/nar/gkaa878 PMCID: PMC7708038{blk}
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Lombard DB, Kohler WJ, Guo AH, Gendron C, Han M, Ding W, Lyu Y, Ching T-T, Wang F-Y, Chakraborty TS, Nikolovska-Coleska Z, Duan Y, Girke T, Hsu A-L, Pletcher SD, Miller RA." />
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<a href="http://localhost:1313/about/">About</a>
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<a href="https://systempipe.org/about/publications/">Publications</a>
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<a href="http://localhost:1313/about/publications/">Publications</a>
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<script src="../../js/main.min.3bff53fa2e8d9a2c4d0b3eeea5987ff2f2cc9a0f4eccb730274827d5e7cd5538.js" integrity="sha256-O/9T&#43;i6NmixNCz7upZh/8vLMmg9OzLcwJ0gn1efNVTg=" crossorigin="anonymous"></script>
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<script src="../../js/main.js"></script>
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