project.yaml

version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_cohort:
    run: cohortextractor:latest generate_cohort --output-format csv --study-definition study_definition --index-date-range "2019-01-01 to 2021-04-30 by month"
    outputs:
      highly_sensitive:
        cohort: output/input_*.csv

  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition
    needs: [generate_cohort]
    outputs:
      moderately_sensitive:
        measures: output/measure_*.csv

  generate_deciles_charts:
    run: python:latest python analysis/generate_deciles_charts.py
    needs: [generate_measures]
    outputs:
      moderately_sensitive:
        figures: output/*.png