Use justfile commands in CI.

Author: tobiasraabe

.github/workflows/main.yml

@@ -25,8 +25,10 @@ jobs:
       - uses: astral-sh/setup-uv@v6
         with:
           enable-cache: true
-      - run: uv run --no-dev --group typing mypy
-      - run: uv run --no-dev --group typing nbqa mypy --ignore-missing-imports .
+      - name: Install just
+        uses: extractions/setup-just@v2
+      - run: just typing
+      - run: just typing-nb
 
   run-tests:
 
@@ -43,8 +45,10 @@ jobs:
       - uses: actions/checkout@v4
       - uses: astral-sh/setup-uv@v6
         with:
-          python-version: ${{ matrix.python-version }}
           enable-cache: true
+          python-version: ${{ matrix.python-version }}
+      - name: Install just
+        uses: extractions/setup-just@v2
 
       - if: matrix.os == 'ubuntu-latest'
         run: |
@@ -53,15 +57,15 @@ jobs:
 
       - name: Run tests, doctests, and notebook tests
         shell: bash -l {0}
-        run: uv run --group test pytest --nbmake --cov=src --cov=tests --cov-report=xml -n auto
+        run: just test-cov
 
       - name: Upload test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
 
       - name: Run tests with lowest resolution
         if: matrix.python-version == '3.9' && matrix.os == 'ubuntu-latest'
-        run: uv run --group test --resolution lowest-direct pytest --nbmake -n auto
+        run: just test-lowest
 
       - name: Run tests with highest resolution
         if: matrix.python-version == '3.13' && matrix.os == 'ubuntu-latest'
-        run: uv run --group test --resolution highest pytest --nbmake -n auto
+        run: just test-highest

.pre-commit-config.yaml

@@ -1,6 +1,3 @@
-ci:
-    skip: [type-checking]
-
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v5.0.0
@@ -31,7 +28,7 @@ repos:
     rev: v0.12.4
     hooks:
       - id: ruff-format
-      - id: ruff
+      - id: ruff-check
 -   repo: https://github.com/executablebooks/mdformat
     rev: 0.7.22
     hooks:
@@ -58,7 +55,7 @@ repos:
     -   id: nbstripout
         exclude: (docs)
 -   repo: https://github.com/crate-ci/typos
-    rev: v1
+    rev: v1.34.0
     hooks:
     -   id: typos
         exclude: (\.ipynb)
@@ -67,10 +64,3 @@ repos:
     -   id: check-hooks-apply
     -   id: check-useless-excludes
     # -   id: identity  # Prints all files passed to pre-commits. Debugging.
--   repo: local
-    hooks:
-    -   id: type-checking
-        name: type-checking
-        entry: uv run --group typing mypy
-        language: system
-        pass_filenames: false

justfile

@@ -1,7 +1,3 @@
-# Default recipe to display available commands
-default:
-    @just --list
-
 # Install all dependencies
 install:
     uv sync --all-groups
@@ -20,11 +16,11 @@ test-nb:
 
 # Run type checking
 typing:
-    uv run --group typing mypy check
+    uv run --group typing --isolated mypy
 
 # Run type checking on notebooks
 typing-nb:
-    uv run --group typing nbqa mypy --ignore-missing-imports .
+    uv run --group typing --isolated nbqa mypy --ignore-missing-imports
 
 # Run linting
 lint: