CSSR (Coarse-grained Secondary Structure of RNAs) is an algorithm for assignment of canonical secondary structure to both full-atomic and coarse-grained 3D structures of RNAs.
We provide pre-compiled binaries for 64bit Linux, 64bit MacOS and 64bit
Windows at exe/CSSR-Linux64, exe/CSSR-Mac64 and
exe/CSSR-Win64.exe, respectively. No compilation is needed.
For operating systems other than those mentioned above, you can compile the program by:
make exe/CSSRexe/CSSR input.pdb output.dssrUse the exe/CSSR -h option to get detail document.
Here, exe/CSSR should be changed to the binaries for your operating
systems if you use pre-compiled binaries.
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version.
See src/README.md for dependencies on other libraries.
Chengxin Zhang, Anna Marie Pyle (2022) "CSSR: assignment of secondary structure to coarse-grained RNA tertiary structures." Acta Crystallogr D. 78, 466-471.