vrs-python/docker-compose.yml at main · progenetix/vrs-python · GitHub

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services:
  seqrepo:
    image: biocommons/seqrepo:2024-12-20
    volumes:
      - seqrepo_vol:/usr/local/share/seqrepo

  seqrepo-rest-service:
    # Test: curl http://localhost:5000/seqrepo/1/sequence/refseq:NM_000551.3
    image: biocommons/seqrepo-rest-service:0.2.2
    volumes:
      - seqrepo_vol:/usr/local/share/seqrepo
    depends_on:
      - seqrepo
    command: seqrepo-rest-service -w /usr/local/share/seqrepo/2024-12-20
    network_mode: bridge
    ports:
      - 5000:5000

  uta:
    # Test:
    # psql -XAt postgres://anonymous@localhost/uta -c 'select count(*) from uta_20241220.transcript'
    # 314227
    image: biocommons/uta:uta_20241220
    environment:
      - POSTGRES_PASSWORD=some-password-that-you-make-up
    volumes:
      - uta_vol:/var/lib/postgresql/data
    ports:
      - 5432:5432

volumes:
  seqrepo_vol:
    external: true
  uta_vol:
    external: true