Remaining datasets to host from #1441 :
| Data type/ details |
method |
PMID |
First/last author |
data source |
status |
Comment |
| intron/spliceosome profiling |
RNA-seq |
29727662 |
Chen/Moore |
PRJNA437439 |
To host |
|
| UTR/TSS/TES mapping |
Data curation |
20118936 |
Lantermann/ Korber |
GSE16040 |
To host |
HIGH PRIORITY dataset for gene structures. see #62 |
| transcriptome/ strand-specific transcriptome |
HybMap |
18641648 |
Dutrow/Cairns |
GSE11619 |
To host |
Curated in Lantermann |
| Chromatin modification/ H4 Ac & H3K36 Me |
CHIPseq |
22121899 |
Sinah/Ekwall |
GSE11511 |
To host |
|
| Nucleosome positioning, histone modifications H3K4me3, transcriptome |
MNase-seq, CHIPseq, RNAseq |
24100010 |
DeGennaro/Winston |
GSE49575 |
To host |
This dataset is used to evaluate Li DeepCAGE |
| translation/ meiosis and sporulation |
ribosome profiling |
24929437 |
Duncan/Mata |
E-MTAB-2176 / E-MTAB-2179 / E-MTAB-2265 / E-MTAB-2470 |
To host |
requested by2 in user survey Q cyclohexamide |
| translation/ meiosis |
proteomics/MS |
32594847 |
Huraiova/Gregan |
|
To host |
Not a browser dataset, could be hosted as HTP expression data |
| meiotic DSBs |
Rec12 mapping (ChIP) |
25024163 |
Fowler/Smith |
GSE49977 |
To host |
|
Other remaining action items:
Also, the data contains 3 "types" of introns: novel introns, novel introns with non canonical splice sites, and known introns. Would it be
possible to display the different types in different colours ?
I forgot about this. I'll do it next.
Remaining datasets to host from #1441 :
Other remaining action items:
Novel introns – Bitton et al. (2015)in different colours