Clashes in modeled peptides

[almeida85]

Hello,
I am trying the method with the given example with PDB: 6X18. For just testing, I generated 10 models, and the output models show a lot of clashes. The picture shows the model with the best pLDDT = 81.26109.

The generated models are unrelaxed. Is there any step for model relaxation to resolve these clashes?

[patrickbryant1]

Hi, we will add relaxation soon. Clashes can be an issue and you can deselect these using the clash score.

Best,

Patrick