chatseek/pyproject.toml at main · patchmemory/chatseek · GitHub

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[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "chatseek"
version = "1.0.0"
description = "Knowledge graph query and GEO submission system for biomedical research"
readme = "README.md"
requires-python = ">=3.8"
license = {text = "MIT"}
authors = [
    {name = "ChatSEEK Contributors"}
]
keywords = ["neo4j", "knowledge-graph", "graphrag", "bioinformatics", "geo-submission"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

dependencies = [
    "neo4j>=5.0",
    "neo4j-graphrag>=0.1",
    "anthropic>=0.7",
    "python-dotenv>=1.0",
    "openpyxl>=3.0",
    "pydantic>=2.0",
    "pydantic-settings>=2.0",
    "click>=8.0",
]

[project.optional-dependencies]
# Heavy dependencies (torch, CUDA) - only for local embeddings/vector search
embeddings = [
    "sentence-transformers>=2.0",
]
dev = [
    "pytest>=7.0",
    "pytest-cov>=4.0",
    "pytest-asyncio>=0.21",
    "black>=23.0",
    "ruff>=0.1",
    "mypy>=1.0",
    "pre-commit>=3.0",
]
demos = [
    "streamlit>=1.28",
    "plotly>=5.0",
    "pandas>=1.5",
    "altair>=5.0",
]
notebooks = [
    "jupyter>=1.0",
    "ipywidgets>=8.0",
    "matplotlib>=3.5",
    "seaborn>=0.12",
    "nbformat>=5.0",
]
openai = [
    "openai>=1.0",
]
all = [
    "chatseek[dev,demos,notebooks,openai,embeddings]",
]

[project.urls]
Homepage = "https://github.com/yourusername/chatseek"
Repository = "https://github.com/yourusername/chatseek"
"Bug Tracker" = "https://github.com/yourusername/chatseek/issues"

[project.scripts]
chatseek = "chatseek.cli.main:cli"

[tool.setuptools.packages.find]
include = ["chatseek*"]
exclude = ["tests*", "docs*", "examples*", "notebooks*", "demos*"]

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]
addopts = "-v --cov=chatseek --cov-report=html --cov-report=term"

[tool.black]
line-length = 100
target-version = ['py38', 'py39', 'py310', 'py311']
include = '\.pyi?$'

[tool.ruff]
line-length = 100
target-version = "py38"
select = ["E", "F", "I", "W", "UP"]
ignore = ["E501"]

[tool.mypy]
python_version = "3.8"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = false