From 74d98792bf33cd290a81fb26f98760c5c7239257 Mon Sep 17 00:00:00 2001 From: Krittin Phornsiricharoenphant Date: Mon, 11 Nov 2019 00:46:29 +0700 Subject: [PATCH] fixed, -lcurl -lssl -lcrypto missing while make. generalize PATH for Easybuild --- makefile | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/makefile b/makefile index 5800733..101a384 100644 --- a/makefile +++ b/makefile @@ -2,13 +2,13 @@ CXX=g++ -std=c++11 #HTSLIB LIBRARY [SPECIFY YOUR OWN PATHS] -HTSLIB_INC=$(HOME)/Tools/htslib-1.9 -HTSLIB_LIB=$(HOME)/Tools/htslib-1.9/libhts.a +HTSLIB_INC=$(EBROOTHTSLIB)/include/htslib +HTSLIB_LIB=$(EBROOTHTSLIB)/lib/libhts.a #BOOST IOSTREAM & PROGRAM_OPTION LIBRARIES [SPECIFY YOUR OWN PATHS] -BOOST_INC=/usr/include -BOOST_LIB_IO=/usr/lib/x86_64-linux-gnu/libboost_iostreams.a -BOOST_LIB_PO=/usr/lib/x86_64-linux-gnu/libboost_program_options.a +BOOST_INC=$(EBROOTBOOST)/include/boost +BOOST_LIB_IO=$(EBROOTBOOST)/lib/libboost_iostreams.a +BOOST_LIB_PO=$(EBROOTBOOST)/lib/libboost_program_options.a #HTSLIB LIBRARY [SPECIFY YOUR OWN PATHS] #HTSLIB_INC=/software/UHTS/Analysis/samtools/1.4/include @@ -33,7 +33,7 @@ CXXFLAG=-O3 -mavx2 -mfma LDFLAG=-O3 #DYNAMIC LIBRARIES -DYN_LIBS=-lz -lbz2 -lm -lpthread -llzma +DYN_LIBS=-lz -lbz2 -lm -lpthread -llzma -lcurl -lssl -lcrypto #SHAPEIT SOURCES & BINARY BFILE=bin/shapeit4