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---
layout: chapter
title: Open science research manual
beschrijving: Manual chapters per study phase
permalink: /toolbox/
---
<section id="portfolio-work">
<div class="container">
<div class="row">
<div class="col-md-12">
<div class="block">
<div class="portfolio-menu">
<!-- <h3 class="text-muted">{{page.beschrijving}}</h3> -->
<p>
This information concerns the chapters of the Urban Vitality/Mensen in Beweging research manual. We have worked on them over the last year in close collaboration with PhD-students, (junior-) researchers and the AUAS Ethical Committee. We were inspired by the Netherlands Code of Conduct for Research Integrity, the anti-research waste movement and principles of open science. Most procedures described have not yet been formally approved by the respective faculties, although some stem from AUAS-policy. However, working along these lines increases quality, transparency and reproducibility of research (output) and decreases research waste. We may not cover the wide range and applications of practice-oriented research, but we think that most chapters hold true for all research disciplines. The manual is primarily intended for AUAS researchers and is focussed at the scientific quality process. Of course there are other forms of integrity and quality, such as financial (project) control and other project management activities, but these fall outside the scope of this manual.
</p>
<ul>
<li class="filter" data-filter="all">Everything</li>
<li class="filter" data-filter=".PLAN">Planning</li>
<li class="filter" data-filter=".COLL">Data collection</li>
<li class="filter" data-filter=".PROC">Processing</li>
<li class="filter" data-filter=".FINI">Finishing</li>
<li class="filter" data-filter=".OSCI">Open science</li>
</ul>
</div>
<div class="portfolio-contant">
<ul id="portfolio-contant-active">
<li class="mix PLAN OSCI">
<a data-toggle="modal" href="{{ site.baseurl }}/orcid">
<img src="{{ site.baseurl }}/img/portfolio/color1.jpg" alt="ORCID">
<div class="position-center">
<h3>ORCID</h3>
</div>
</a>
</li>
<li class="mix PLAN FINI">
<a data-toggle="modal" href="{{ site.baseurl }}/reportingguidelines">
<img src="{{ site.baseurl }}/img/portfolio/color2.jpg" alt="Reporting">
<div class="position-center">
<h3>Reporting guidelines</h3>
</div>
</a>
</li>
<li class="mix PLAN">
<a data-toggle="modal" href="{{ site.baseurl }}/researchprotocol">
<img src="{{ site.baseurl }}/img/portfolio/color3.jpg" alt="Protocol">
<div class="position-center">
<h3>Research protocol/plan</h3>
</div>
</a>
</li>
<li class="mix PLAN">
<a data-toggle="modal" href="{{ site.baseurl }}/datamanagementplan">
<img src="{{ site.baseurl }}/img/portfolio/color4.jpg" alt="DMP">
<div class="position-center">
<h3>Data Management Plan</h3>
</div>
</a>
</li>
<li class="mix PLAN">
<a data-toggle="modal" href="{{ site.baseurl }}/analysisplan">
<img src="{{ site.baseurl }}/img/portfolio/color5.jpg" alt="SAP">
<div class="position-center">
<h3>(Statistical) Analysis Plan</h3>
</div>
</a>
</li>
<li class="mix PLAN OSCI">
<a data-toggle="modal" href="{{ site.baseurl }}/preregistration">
<img src="{{ site.baseurl }}/img/portfolio/color6.jpg" alt="Preregistration">
<div class="position-center">
<h3>Preregistration</h3>
</div>
</a>
</li>
<li class="mix PLAN">
<a data-toggle="modal" href="{{ site.baseurl }}/ethicalappraisal">
<img src="{{ site.baseurl }}/img/portfolio/color7.jpg" alt="Ethics">
<div class="position-center">
<h3>Ethical appraisal</h3>
</div>
</a>
</li>
<li class="mix PLAN COLL PROC FINI OSCI">
<a data-toggle="modal" href="{{ site.baseurl }}/privacy">
<img src="{{ site.baseurl }}/img/portfolio/color8.jpg" alt="Privacy">
<div class="position-center">
<h3>Privacy</h3>
</div>
</a>
</li>
<li class="mix FINI OSCI">
<a data-toggle="modal" href="{{ site.baseurl }}/datapackage">
<img src="{{ site.baseurl }}/img/portfolio/color1.jpg" alt="FAIR">
<div class="position-center">
<h3>Archiving / publishing data</h3>
</div>
</a>
</li>
<li class="mix FINI">
<a data-toggle="modal" href="{{ site.baseurl }}/nondigitalarchiving">
<img src="{{ site.baseurl }}/img/portfolio/color2.jpg" alt="Non-digital archiving">
<div class="position-center">
<h3>Non-digital archiving</h3>
</div>
</a>
</li>
<li class="mix FINI OSCI">
<a data-toggle="modal" href="{{ site.baseurl }}/openaccesspublishing">
<img src="{{ site.baseurl }}/img/portfolio/color3.jpg" alt="Open access publishing">
<div class="position-center">
<h3>Open access</h3>
</div>
</a>
</li>
</ul>
</div>
</div>
</div>
</div>
</div>
</section>
<section id="uvcontent">
<div class="container">
<div class="row">
<div class="col-lg-12 text-center">
<h3 class="text-muted">Accompanying open science tools</h3>
<p>
</p>
<p>
Below a quick overview of and link to available tools. Items with an * indicate the manual chapters. Explanation of the abbreviations underneath the table.
</p>
</div>
</div>
<div class="row">
<div class="col-lg-12">
<table class="table table-condensed toolboxtable">
<colgroup>
<col></col>
<col class="toolboxcolumn1"></col>
<col></col>
<col class="toolboxcolumn1"></col>
</colgroup>
<thead>
<tr>
<th>Study phase</th>
<th>Good research practice</th>
<th>Open science</th>
<th>Tools/notes</th>
</tr>
</thead>
<tbody>
<tr>
<td rowspan="3">Planning</td>
<td><a href="{{ site.baseurl }}/researchprotocol">Study protocol*</a><br><a href="{{ site.baseurl }}/analysisplan">(S)AP*</a><br><a href="{{ site.baseurl }}/datamanagementplan">DMP*</a></td>
<td><a href="{{ site.baseurl }}/preregistration">Preregistration*</a></td>
<td><a href="https://osf.io/" target="_blank">OSF</a><br><a href="http://www.dagitty.net/" target="_blank">DAG</a><br><a href="https://rdm.uva.nl/plannen/dmponline/dmponline.html" target="_blank">DMPonline</a><br>NTR</td>
</tr>
<tr>
<td>Ensure <a href="{{ site.baseurl }}/privacy">privacy*<a/></td>
<td></td>
<td>DMPonline<br><a href="https://az.hva.nl/medewerkers/bewegen-sport-voeding/az-lemmas/medewerkers/hva-breed/juridische-zaken/avg/privacy.html" target="_blank">HvA privacy tools</a><br>Informed consent</td>
</tr>
<tr>
<td><a href="{{ site.baseurl }}/ethicalappraisal">Ethical appraisal*</a></td>
<td></td>
<td>ECO or METc<br>Informed consent</td>
</tr>
<tr>
<td rowspan="3">Data collection</td>
<td>Data capturing</td>
<td>FAIR</td>
<td>Castor<br>Qualtrics<br>Audio<br>Video<br>Sensor<br>Apps<br>External<br>Reuse</td>
</tr>
<tr>
<td>Codebook<br><br>Logbook</td>
<td>Share</td>
<td>OSF<br>example</td>
</tr>
<tr>
<td>Ensure <a href="{{ site.baseurl }}/privacy">privacy*<a/></td>
<td></td>
<td>Pseudonomization<br>Key-file<br>HvA privacy tools</td>
</tr>
<tr>
<td rowspan="5">Processing & Analysing</td>
<td>Qualitative</td>
<td>FAIR: <a href="https://dans.knaw.nl/nl/over/diensten/easy/toelichting-data-deponeren/voor-het-deponeren/bestandsformaten/refi-qda-qualitative-data-analysis" target="_blank">Interoperable format</a></td>
<td>MAXQDA</td>
</tr>
<tr>
<td>Software development</td>
<td>FAIR</td>
<td><a href="https://fair-software.nl/" target="_blank">5 recommendations</a><br>Github</td>
</tr>
<tr>
<td>Document workflow, syntax, processing</td>
<td>Share</td>
<td>OSF<br><a href="https://bookdown.org/yihui/rmarkdown/notebook.html" target="_blank">R-notebook</a></td>
</tr>
<tr>
<td>Update / iterate over your plans. Version control</td>
<td></td>
<td>OSF<br>DMPonline</td>
</tr>
<tr>
<td>Ensure <a href="{{ site.baseurl }}/privacy">privacy*<a/></td>
<td></td>
<td>HvA privacy tools</td>
</tr>
<tr>
<td rowspan="4">Output & Archiving</td>
<td>Use <a href="{{ site.baseurl }}/reportingguidelines">reporting guidelines*</a></td>
<td>Publish <a href="{{ site.baseurl }}/openaccesspublishing">open access*</a></td>
<td>Equator network<br>PURE<br>HvA library</td>
</tr>
<tr>
<td><a href="{{ site.baseurl }}/datapackage">Data package/archiving*</a></td>
<td>FAIR</td>
<td><a href="https://doi.org/10.5281/zenodo.3405141" target="_blank">FAIR-checklist</a><br><a href="https://uvaauas.figshare.com/auas" target="_blank">UvA/HvA Figshare</a><br>Informed consent</td>
</tr>
<tr>
<td><a href="{{ site.baseurl }}/nondigitalarchiving">Non-digital archiving*</td>
<td></td>
<td>FBSV and FG research archive</td>
</tr>
<tr>
<td>Ensure <a href="{{ site.baseurl }}/privacy">privacy*<a/></td>
<td></td>
<td>HvA privacy tools</td>
</tr>
</tbody>
</table>
</div>
<div class="col-lg-12">
<p>
Abbreviations. (S)AP=(Statistical)Analysis Plan; DMP=Data Management Plan; OSF=Open Science Framework; DAG=Directed Acyclic Graphs; NTR=Nederlands Trial Register; WMO=Wet medisch-wetenschappelijk onderzoek; ECO=Ethische Commissie Onderzoek HvA; METc=Medisch-ethische toetsingscommissie; FAIR=Findable, Accessible, Interoperable, Reusable; FBSV=Faculteit Bewegen, Sport en Voeding; FG=Faculteit Gezondheid
</p>
</div>
</div>
</div>
</section>