Test run error - bash compatibility?

[mssanjavickovic]

Hey @mckellardw ,

getting this one during the dry run installation:

Error in rule ont_1c_filter_barcodes:
jobid: 150
input: out/test_Heart_Control/ont/barcodes_umis/seeker_internalTrim/barcodes.tsv
output: out/test_Heart_Control/ont/barcodes_umis/seeker_internalTrim/barcodes_filtered.tsv
shell:

    cat out/test_Heart_Control/ont/barcodes_umis/seeker_internalTrim/barcodes.tsv | grep -vP "	-" > out/test_Heart_Control/ont/barcodes_umis/seeker_internalTrim/barcodes_filtered.tsv
    
    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Conda built the envs fine but I can't seem to get around this one. Any ideas?