NAMESPACE

import(methods)
import(BiocGenerics, except = "plotMA")
import(SummarizedExperiment)
import(limma, except = "plotMA")
import(S4Vectors)
importFrom("scales", "alpha")
importFrom("graphics", "lines")
importFrom("stats", "approxfun", "lowess", "pt", "quantile", "setNames")
importFrom("statmod", "mixedModel2Fit")
importFrom("tidyr", "pivot_wider")
importFrom("tidyr", "unite")
importFrom("dplyr", "%>%", "group_by", "summarise", "mutate", "filter", "ungroup", "pull", "select", "n", "row_number", "arrange", "matches", "rename_with")
importFrom("rlang", "sym")
importFrom("mpra", MPRASet, getRNA, getDNA, getBarcode, getEid, getEseq, normalize_counts, mpralm, get_precision_weights)

export(MPRASet, getRNA, getDNA, getBarcode, getEid, getEseq, getLabel)
export(mpralm, get_precision_weights, compute_logratio, normalize_counts, fit_elements)
export(downsample_barcodes, create_dna_df, create_rna_df, create_var_df)
export(plot_groups, mpra_treat)