High throughput molecular annotation for imaging mass spectrometry datasets
- Centroided imzML files as input dataset files
- Apache Spark based implementation for easy scaling from one machine to a cluster
- Can be run in both local and distributed modes
- Comes with unit, regression and scientific tests
- Web application for upload and browsing search results
- Ansible project for easy deployment to AWS
Please check the sm-engine-ansible project
Please visit the help page of our web application running on AWS:
Install CircleCI CLI tool and run circleci build from the project root.
This project is licensed under the Apache 2.0 license.