diff --git a/R/centrality.R b/R/centrality.R
index 0cec52a6a4..715d17ecff 100644
--- a/R/centrality.R
+++ b/R/centrality.R
@@ -68,10 +68,8 @@ hub.score <- function(
   weights = NULL,
   options = arpack_defaults()
 ) {
-  # nocov start
   lifecycle::deprecate_stop("2.0.0", "hub.score()", "hits_scores()")
-  hub_score(graph = graph, scale = scale, weights = weights, options = options)
-} # nocov end
+}
 
 #' Kleinberg's hub and authority centrality scores.
 #'
@@ -89,15 +87,8 @@ authority.score <- function(
   weights = NULL,
   options = arpack_defaults()
 ) {
-  # nocov start
   lifecycle::deprecate_stop("2.0.0", "authority.score()", "hits_scores()")
-  authority_score(
-    graph = graph,
-    scale = scale,
-    weights = weights,
-    options = options
-  )
-} # nocov end
+}
 
 #' Strength or weighted vertex degree
 #'
diff --git a/R/centralization.R b/R/centralization.R
index e0655d7f29..54eda62647 100644
--- a/R/centralization.R
+++ b/R/centralization.R
@@ -409,7 +409,6 @@ centr_degree_tmax <- function(
       what = "centr_degree_tmax(loops = 'must be explicit')",
       details = "The default value (currently `FALSE`) will be dropped in the next release. Add an explicit value for the `loops` argument."
     )
-    loops <- FALSE
   }
 
   # Argument checks
diff --git a/R/console.R b/R/console.R
index ff898e1bfe..d4a7c8becd 100644
--- a/R/console.R
+++ b/R/console.R
@@ -58,12 +58,10 @@ igraph.console <- function() {
 #' @family console
 #' @export
 console <- function() {
-  oldverb <- igraph_opt("verbose")
-  igraph_options(verbose = "tkconsole")
-  pb <- .igraph.progress.tkconsole.create(oldverb)
-  assign(".igraph.pb", pb, envir = asNamespace("igraph"))
-  .igraph.progress.tkconsole.message("Console started.\n")
-  invisible()
+  lifecycle::deprecate_stop(
+    "3.0.0",
+    "console()",
+  )
 }
 
 .igraph.pb <- NULL
diff --git a/R/games.R b/R/games.R
index 17d42f7fd9..3b0c8a08ac 100644
--- a/R/games.R
+++ b/R/games.R
@@ -498,22 +498,12 @@ bipartite.random.game <- function(
   directed = FALSE,
   mode = c("out", "in", "all")
 ) {
-  # nocov start
   lifecycle::deprecate_stop(
     "2.0.0",
     "bipartite.random.game()",
     details = "Use sample_bipartite_gnp() or sample_bipartite_gnm()"
   )
-  sample_bipartite(
-    n1 = n1,
-    n2 = n2,
-    type = type,
-    p = p,
-    m = m,
-    directed = directed,
-    mode = mode
-  )
-} # nocov end
+}
 
 #' Generate random graphs using preferential attachment
 #'
@@ -1392,7 +1382,6 @@ sample_degseq <- function(
       "2.1.0",
       "sample_degseq(method = 'must be configuration instead of simple')"
     )
-    method <- "configuration"
   }
 
   if (method == "simple.no.multiple") {
@@ -1400,7 +1389,6 @@ sample_degseq <- function(
       "2.1.0",
       "sample_degseq(method = 'must be fast.heur.simple instead of simple.no.multiple')"
     )
-    method <- "fast.heur.simple"
   }
 
   if (method == "simple.no.multiple.uniform") {
@@ -1408,7 +1396,6 @@ sample_degseq <- function(
       "2.1.0",
       "sample_degseq(method = 'must be configuration.simple instead of simple.no.multiple.uniform')"
     )
-    method <- "configuration.simple"
   }
 
   # numbers from https://github.com/igraph/igraph/blob/640083c88bf85fd322ff7b748b9b4e16ebe32aa2/include/igraph_constants.h#L94
diff --git a/R/interface.R b/R/interface.R
index 9cd977cb47..e589ea2fc3 100644
--- a/R/interface.R
+++ b/R/interface.R
@@ -479,7 +479,6 @@ el_to_vec <- function(x, call = rlang::caller_env()) {
         "get_edge_ids(vp = 'supplied as a matrix should be a n times 2 matrix, not 2 times n')",
         details = "either transpose the matrix with t() or convert it to a data.frame with two columns."
       )
-      c(x)
     } else if (ncol == 2) {
       c(t(x))
     } else {
diff --git a/R/layout.R b/R/layout.R
index cd1166e1b5..aa881913a5 100644
--- a/R/layout.R
+++ b/R/layout.R
@@ -2645,7 +2645,6 @@ layout_components <- function(graph, layout = layout_with_kk, ...) {
 #' @keywords internal
 layout.spring <- function(graph, ...) {
   lifecycle::deprecate_stop("2.1.0", "layout.spring()", "layout_with_fr()")
-  layout_with_fr(graph)
 }
 
 #' SVD layout, this was removed from igraph
@@ -2663,7 +2662,6 @@ layout.spring <- function(graph, ...) {
 #' @export
 layout.svd <- function(graph, ...) {
   lifecycle::deprecate_stop("2.1.0", "layout.svd()", "layout_with_fr()")
-  layout_with_fr(graph)
 }
 
 #' Grid Fruchterman-Reingold layout, this was removed from igraph
@@ -2686,7 +2684,6 @@ layout.fruchterman.reingold.grid <- function(graph, ...) {
     "layout.fruchterman.reingold.grid()",
     "layout_with_fr()"
   )
-  layout_with_fr(graph)
 }
 
 #' The DrL graph layout generator
diff --git a/R/structural-properties.R b/R/structural-properties.R
index 17f85cfbad..1aff1e36d2 100644
--- a/R/structural-properties.R
+++ b/R/structural-properties.R
@@ -2726,9 +2726,6 @@ bfs <- function(
 
   if (lifecycle::is_present(father)) {
     lifecycle::deprecate_stop("2.2.0", "bfs(father = )", "bfs(parent = )")
-    if (missing(parent)) {
-      parent <- father
-    }
   }
 
   if (length(root) == 1) {
@@ -2988,9 +2985,6 @@ dfs <- function(
 
   if (lifecycle::is_present(father)) {
     lifecycle::deprecate_stop("2.2.0", "dfs(father = )", "dfs(parent = )")
-    if (missing(parent)) {
-      parent <- father
-    }
   }
 
   root <- as_igraph_vs(graph, root) - 1
diff --git a/R/tkplot.R b/R/tkplot.R
index 1092800a95..0b501c4559 100644
--- a/R/tkplot.R
+++ b/R/tkplot.R
@@ -325,482 +325,7 @@ assign(".next", 1, .tkplot.env)
 #' }
 #'
 tkplot <- function(graph, canvas.width = 450, canvas.height = 450, ...) {
-  # nocov start
-  ensure_igraph(graph)
-
-  # Libraries
-  requireNamespace("tcltk", quietly = TRUE) ||
-    stop("tcl/tk library not available")
-
-  params <- i.parse.plot.params(graph, list(...))
-
-  # Use the palette specified by the user (if any)
-  palette <- params("plot", "palette")
-  if (!is.null(palette)) {
-    old_palette <- palette(palette)
-    on.exit(palette(old_palette), add = TRUE)
-  }
-
-  # Visual parameters
-  labels <- params("vertex", "label")
-  label.color <- .tkplot.convert.color(params("vertex", "label.color"))
-  label.font <- .tkplot.convert.font(
-    params("vertex", "label.font"),
-    params("vertex", "label.family"),
-    params("vertex", "label.cex")
-  )
-  label.degree <- params("vertex", "label.degree")
-  label.dist <- params("vertex", "label.dist")
-  vertex.color <- .tkplot.convert.color(params("vertex", "color"))
-  vertex.size <- params("vertex", "size")
-
-  # Adjusting size
-  vertex.size <- i.rescale.vertex(
-    vertex.size,
-    c(-canvas.width, canvas.height) / 2,
-    params("vertex", "relative.size")
-  )
-
-  vertex.frame.color <- .tkplot.convert.color(params("vertex", "frame.color"))
-
-  edge.color <- .tkplot.convert.color(params("edge", "color"))
-  edge.width <- params("edge", "width")
-  edge.labels <- params("edge", "label")
-  edge.lty <- params("edge", "lty")
-  loop.angle <- params("edge", "loop.angle")
-  arrow.mode <- params("edge", "arrow.mode")
-  edge.label.font <- .tkplot.convert.font(
-    params("edge", "label.font"),
-    params("edge", "label.family"),
-    params("edge", "label.cex")
-  )
-  edge.label.color <- params("edge", "label.color")
-  arrow.size <- params("edge", "arrow.size")[1]
-  curved <- params("edge", "curved")
-  curved <- rep(curved, length.out = ecount(graph))
-
-  layout <- unname(params("plot", "layout"))
-  layout[, 2] <- -layout[, 2]
-  margin <- params("plot", "margin")
-  margin <- rep(margin, length.out = 4)
-
-  # the new style parameters can't do this yet
-  arrow.mode <- i.get.arrow.mode(graph, arrow.mode)
-
-  # Edge line type
-  edge.lty <- i.tkplot.get.edge.lty(edge.lty)
-
-  # Create window & canvas
-  top <- tcltk::tktoplevel(background = "lightgrey")
-  canvas <- tcltk::tkcanvas(
-    top,
-    relief = "raised",
-    width = canvas.width,
-    height = canvas.height,
-    borderwidth = 2
-  )
-  tcltk::tkpack(canvas, fill = "both", expand = 1)
-
-  # Create parameters
-  vertex.params <- sdf(
-    vertex.color = vertex.color,
-    vertex.size = vertex.size,
-    label.font = label.font,
-    NROW = vcount(graph)
-  )
-
-  params <- list(
-    vertex.params = vertex.params,
-    edge.color = edge.color,
-    label.color = label.color,
-    labels.state = 1,
-    edge.width = edge.width,
-    padding = margin * 300 + max(vertex.size) + 5,
-    grid = 0,
-    label.degree = label.degree,
-    label.dist = label.dist,
-    edge.labels = edge.labels,
-    vertex.frame.color = vertex.frame.color,
-    loop.angle = loop.angle,
-    edge.lty = edge.lty,
-    arrow.mode = arrow.mode,
-    edge.label.font = edge.label.font,
-    edge.label.color = edge.label.color,
-    arrow.size = arrow.size,
-    curved = curved
-  )
-
-  # The popup menu
-  popup.menu <- tcltk::tkmenu(canvas)
-  tcltk::tkadd(
-    popup.menu,
-    "command",
-    label = "Fit to screen",
-    command = function() {
-      tk_fit(tkp.id)
-    }
-  )
-
-  # Different popup menu for vertices
-  vertex.popup.menu <- tcltk::tkmenu(canvas)
-  tcltk::tkadd(
-    vertex.popup.menu,
-    "command",
-    label = "Vertex color",
-    command = function() {
-      tkp <- .tkplot.get(tkp.id)
-      vids <- .tkplot.get.selected.vertices(tkp.id)
-      if (length(vids) == 0) {
-        return(FALSE)
-      }
-
-      initialcolor <- tkp$params$vertex.params[vids[1], "vertex.color"]
-      color <- .tkplot.select.color(initialcolor)
-      if (color == "") {
-        return(FALSE)
-      } # Cancel
-
-      .tkplot.update.vertex.color(tkp.id, vids, color)
-    }
-  )
-  tcltk::tkadd(
-    vertex.popup.menu,
-    "command",
-    label = "Vertex size",
-    command = function() {
-      tkp <- .tkplot.get(tkp.id)
-      vids <- .tkplot.get.selected.vertices(tkp.id)
-      if (length(vids) == 0) {
-        return(FALSE)
-      }
-
-      initialsize <- tkp$params$vertex.params[1, "vertex.size"]
-      size <- .tkplot.select.number("Vertex size", initialsize, 1, 20)
-      if (is.na(size)) {
-        return(FALSE)
-      }
-
-      .tkplot.update.vertex.size(tkp.id, vids, size)
-    }
-  )
-
-  # Different popup menu for edges
-  edge.popup.menu <- tcltk::tkmenu(canvas)
-  tcltk::tkadd(
-    edge.popup.menu,
-    "command",
-    label = "Edge color",
-    command = function() {
-      tkp <- .tkplot.get(tkp.id)
-      eids <- .tkplot.get.selected.edges(tkp.id)
-      if (length(eids) == 0) {
-        return(FALSE)
-      }
-
-      initialcolor <- ifelse(
-        length(tkp$params$edge.color) > 1,
-        tkp$params$edge.color[eids[1]],
-        tkp$params$edge.color
-      )
-      color <- .tkplot.select.color(initialcolor)
-      if (color == "") {
-        return(FALSE)
-      } # Cancel
-
-      .tkplot.update.edge.color(tkp.id, eids, color)
-    }
-  )
-  tcltk::tkadd(
-    edge.popup.menu,
-    "command",
-    label = "Edge width",
-    command = function() {
-      tkp <- .tkplot.get(tkp.id)
-      eids <- .tkplot.get.selected.edges(tkp.id)
-      if (length(eids) == 0) {
-        return(FALSE)
-      }
-
-      initialwidth <- ifelse(
-        length(tkp$params$edge.width) > 1,
-        tkp$params$edge.width[eids[1]],
-        tkp$params$edge.width
-      )
-      width <- .tkplot.select.number("Edge width", initialwidth, 1, 10)
-      if (is.na(width)) {
-        return(FALSE)
-      } # Cancel
-
-      .tkplot.update.edge.width(tkp.id, eids, width)
-    }
-  )
-
-  # Create plot object
-  tkp <- list(
-    top = top,
-    canvas = canvas,
-    graph = graph,
-    coords = layout,
-    labels = labels,
-    params = params,
-    popup.menu = popup.menu,
-    vertex.popup.menu = vertex.popup.menu,
-    edge.popup.menu = edge.popup.menu
-  )
-  tkp.id <- .tkplot.new(tkp)
-  tcltk::tktitle(top) <- paste("Graph plot", as.character(tkp.id))
-
-  # The main pull-down menu
-  main.menu <- tcltk::tkmenu(top)
-  tcltk::tkadd(main.menu, "command", label = "Close", command = function() {
-    tk_close(tkp.id, TRUE)
-  })
-  select.menu <- .tkplot.select.menu(tkp.id, main.menu)
-  tcltk::tkadd(main.menu, "cascade", label = "Select", menu = select.menu)
-  layout.menu <- .tkplot.layout.menu(tkp.id, main.menu)
-  tcltk::tkadd(main.menu, "cascade", label = "Layout", menu = layout.menu)
-  view.menu <- tcltk::tkmenu(main.menu)
-  tcltk::tkadd(main.menu, "cascade", label = "View", menu = view.menu)
-  tcltk::tkadd(
-    view.menu,
-    "command",
-    label = "Fit to screen",
-    command = function() {
-      tk_fit(tkp.id)
-    }
-  )
-  tcltk::tkadd(
-    view.menu,
-    "command",
-    label = "Center on screen",
-    command = function() {
-      tk_center(tkp.id)
-    }
-  )
-  tcltk::tkadd(view.menu, "separator")
-  view.menu.labels <- tcltk::tclVar(1)
-  view.menu.grid <- tcltk::tclVar(0)
-  tcltk::tkadd(
-    view.menu,
-    "checkbutton",
-    label = "Labels",
-    variable = view.menu.labels,
-    command = function() {
-      .tkplot.toggle.labels(tkp.id)
-    }
-  )
-  # grid canvas object not implemented in tcltk (?) :(
-  #   tcltk::tkadd(view.menu, "checkbutton", label="Grid",
-  #         variable=view.menu.grid, command=function() {
-  #           .tkplot.toggle.grid(tkp.id)})
-  tcltk::tkadd(view.menu, "separator")
-  rotate.menu <- tcltk::tkmenu(view.menu)
-  tcltk::tkadd(view.menu, "cascade", label = "Rotate", menu = rotate.menu)
-  sapply(
-    c(-90, -45, -15, -5, -1, 1, 5, 15, 45, 90),
-    function(deg) {
-      tcltk::tkadd(
-        rotate.menu,
-        "command",
-        label = paste(deg, "degree"),
-        command = function() {
-          tk_rotate(tkp.id, degree = deg)
-        }
-      )
-    }
-  )
-  export.menu <- tcltk::tkmenu(main.menu)
-  tcltk::tkadd(main.menu, "cascade", label = "Export", menu = export.menu)
-  tcltk::tkadd(
-    export.menu,
-    "command",
-    label = "Postscript",
-    command = function() {
-      tk_postscript(tkp.id)
-    }
-  )
-  tcltk::tkconfigure(top, "-menu", main.menu)
-
-  # plot it
-  .tkplot.create.edges(tkp.id)
-  .tkplot.create.vertices(tkp.id)
-  # we would need an update here
-  tk_fit(tkp.id, canvas.width, canvas.height)
-
-  # Kill myself if window was closed
-  tcltk::tkbind(top, "<Destroy>", function() tk_close(tkp.id, FALSE))
-
-  ###################################################################
-  # The callbacks for interactive editing
-  ###################################################################
-
-  tcltk::tkitembind(canvas, "vertex||label||edge", "<1>", function(x, y) {
-    tkp <- .tkplot.get(tkp.id)
-    canvas <- .tkplot.get(tkp.id, "canvas")
-    .tkplot.deselect.all(tkp.id)
-    .tkplot.select.current(tkp.id)
-    #     tcltk::tkitemraise(canvas, "current")
-  })
-  tcltk::tkitembind(
-    canvas,
-    "vertex||label||edge",
-    "<Control-1>",
-    function(x, y) {
-      canvas <- .tkplot.get(tkp.id, "canvas")
-      curtags <- as.character(tcltk::tkgettags(canvas, "current"))
-      seltags <- as.character(tcltk::tkgettags(canvas, "selected"))
-      if ("vertex" %in% curtags && "vertex" %in% seltags) {
-        if ("selected" %in% curtags) {
-          .tkplot.deselect.current(tkp.id)
-        } else {
-          .tkplot.select.current(tkp.id)
-        }
-      } else if ("edge" %in% curtags && "edge" %in% seltags) {
-        if ("selected" %in% curtags) {
-          .tkplot.deselect.current(tkp.id)
-        } else {
-          .tkplot.select.current(tkp.id)
-        }
-      } else if ("label" %in% curtags && "vertex" %in% seltags) {
-        vtag <- curtags[pmatch("v-", curtags)]
-        tkid <- as.numeric(tcltk::tkfind(
-          canvas,
-          "withtag",
-          paste(sep = "", "vertex&&", vtag)
-        ))
-        vtags <- as.character(tcltk::tkgettags(canvas, tkid))
-        if ("selected" %in% vtags) {
-          .tkplot.deselect.vertex(tkp.id, tkid)
-        } else {
-          .tkplot.select.vertex(tkp.id, tkid)
-        }
-      } else {
-        .tkplot.deselect.all(tkp.id)
-        .tkplot.select.current(tkp.id)
-      }
-    }
-  )
-  tcltk::tkitembind(
-    canvas,
-    "vertex||edge||label",
-    "<Shift-Alt-1>",
-    function(x, y) {
-      canvas <- .tkplot.get(tkp.id, "canvas")
-      tcltk::tkitemlower(canvas, "current")
-    }
-  )
-  tcltk::tkitembind(canvas, "vertex||edge||label", "<Alt-1>", function(x, y) {
-    canvas <- .tkplot.get(tkp.id, "canvas")
-    tcltk::tkitemraise(canvas, "current")
-  })
-  tcltk::tkbind(canvas, "<3>", function(x, y) {
-    canvas <- .tkplot.get(tkp.id, "canvas")
-    tags <- as.character(tcltk::tkgettags(canvas, "current"))
-    if ("label" %in% tags) {
-      vtag <- tags[pmatch("v-", tags)]
-      vid <- as.character(tcltk::tkfind(
-        canvas,
-        "withtag",
-        paste(sep = "", "vertex&&", vtag)
-      ))
-      tags <- as.character(tcltk::tkgettags(canvas, vid))
-    }
-    if ("selected" %in% tags) {
-      # The selection is active
-    } else {
-      # Delete selection, single object
-      .tkplot.deselect.all(tkp.id)
-      .tkplot.select.current(tkp.id)
-    }
-    tags <- as.character(tcltk::tkgettags(canvas, "selected"))
-    ## TODO: what if different types of objects are selected
-    if ("vertex" %in% tags || "label" %in% tags) {
-      menu <- .tkplot.get(tkp.id, "vertex.popup.menu")
-    } else if ("edge" %in% tags) {
-      menu <- .tkplot.get(tkp.id, "edge.popup.menu")
-    } else {
-      menu <- .tkplot.get(tkp.id, "popup.menu")
-    }
-    x <- as.integer(x) + as.integer(tcltk::tkwinfo("rootx", canvas))
-    y <- as.integer(y) + as.integer(tcltk::tkwinfo("rooty", canvas))
-    tcltk::.Tcl(paste("tk_popup", tcltk::.Tcl.args(menu, x, y)))
-  })
-  if (tkp$params$label.dist == 0) {
-    tobind <- "vertex||label"
-  } else {
-    tobind <- "vertex"
-  }
-  tcltk::tkitembind(canvas, tobind, "<B1-Motion>", function(x, y) {
-    tkp <- .tkplot.get(tkp.id)
-    x <- as.numeric(x)
-    y <- as.numeric(y)
-    width <- as.numeric(tcltk::tkwinfo("width", tkp$canvas))
-    height <- as.numeric(tcltk::tkwinfo("height", tkp$canvas))
-    if (x < 10) {
-      x <- 10
-    }
-    if (x > width - 10) {
-      x <- width - 10
-    }
-    if (y < 10) {
-      y <- 10
-    }
-    if (y > height - 10) {
-      y <- height - 10
-    }
-
-    # get the id
-    tags <- as.character(tcltk::tkgettags(tkp$canvas, "selected"))
-    id <- as.numeric(strsplit(tags[pmatch("v-", tags)], "-", fixed = TRUE)[[1]][
-      2
-    ])
-    if (is.na(id)) {
-      return()
-    }
-    # move the vertex
-    .tkplot.set.vertex.coords(tkp.id, id, x, y)
-    .tkplot.update.vertex(tkp.id, id, x, y)
-  })
-  if (tkp$params$label.dist != 0) {
-    tcltk::tkitembind(canvas, "label", "<B1-Motion>", function(x, y) {
-      tkp <- .tkplot.get(tkp.id)
-      x <- as.numeric(x)
-      y <- as.numeric(y)
-      # get the id
-      tags <- as.character(tcltk::tkgettags(tkp$canvas, "selected"))
-      id <- as.numeric(strsplit(tags[pmatch("v-", tags)], "-", fixed = TRUE)[[
-        1
-      ]][2])
-      if (is.na(id)) {
-        return()
-      }
-      phi <- pi + atan2(tkp$coords[id, 2] - y, tkp$coords[id, 1] - x)
-      .tkplot.set.label.degree(tkp.id, id, phi)
-      .tkplot.update.label(tkp.id, id, tkp$coords[id, 1], tkp$coords[id, 2])
-    })
-  }
-
-  # We don't need these any more, they are stored in the environment
-  rm(
-    tkp,
-    params,
-    layout,
-    vertex.color,
-    edge.color,
-    top,
-    canvas,
-    main.menu,
-    layout.menu,
-    view.menu,
-    export.menu,
-    label.font,
-    label.degree,
-    vertex.frame.color,
-    vertex.params
-  )
-
-  tkp.id
-  # nocov end
+  lifecycle::deprecate_stop("3.0.0", "tkplot()")
 }
 
 ###################################################################
diff --git a/revdep/README.md b/revdep/README.md
index 56bff1024a..2a679c705a 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,11 +1,12 @@
 # Revdeps
 
-## Failed to check (10)
+## Failed to check (11)
 
 |package     |version |error |warning |note |
 |:-----------|:-------|:-----|:-------|:----|
 |blavaan     |0.5-10  |1     |        |     |
 |caugi       |1.2.0   |1     |        |     |
+|ClustAssess |?       |      |        |     |
 |deepSTRAPP  |?       |      |        |     |
 |ggpicrust2  |?       |      |        |     |
 |MiscMetabar |?       |      |        |     |
@@ -15,23 +16,33 @@
 |spopt       |0.1.2   |1     |        |     |
 |streamDAG   |?       |      |        |     |
 
-## New problems (15)
+## New problems (25)
 
-|package    |version |error  |warning |note   |
-|:----------|:-------|:------|:-------|:------|
-|[comato](problems.md#comato)|1.1     |__+1__ |        |       |
-|[cranly](problems.md#cranly)|0.6.0   |__+1__ |        |       |
-|[dci](problems.md#dci)|1.0.3   |__+3__ |        |       |
-|[degreenet](problems.md#degreenet)|1.3-6   |__+1__ |        |       |
-|[ECoL](problems.md#ecol)|0.3.0   |__+2__ |        |       |
-|[FrF2](problems.md#frf2)|2.3-4   |       |        |__+1__ |
-|[ggraph](problems.md#ggraph)|2.2.2   |__+2__ |        |       |
-|[GoodFitSBM](problems.md#goodfitsbm)|0.0.1   |__+1__ |        |       |
-|[migraph](problems.md#migraph)|1.6.2   |__+1__ |        |       |
-|[nat](problems.md#nat)|1.8.25  |__+3__ |        |       |
-|[qgraph](problems.md#qgraph)|1.9.8   |__+1__ |        |       |
-|[R6causal](problems.md#r6causal)|0.8.3   |       |__+1__  |       |
-|[scistreer](problems.md#scistreer)|1.2.1   |__+1__ |        |1      |
-|[tidygraph](problems.md#tidygraph)|1.3.1   |__+2__ |        |1      |
-|[vkR](problems.md#vkr)|0.2     |       |__+1__  |       |
+|package    |version  |error  |warning |note   |
+|:----------|:--------|:------|:-------|:------|
+|[Boptbd](problems.md#boptbd)|1.0.7    |__+1__ |        |       |
+|[c3net](problems.md#c3net)|1.1.1.1  |__+1__ |        |       |
+|[Cascade](problems.md#cascade)|2.3      |       |__+1__  |       |
+|[comato](problems.md#comato)|1.1      |__+1__ |        |       |
+|[cranly](problems.md#cranly)|0.6.0    |__+1__ |        |       |
+|[dci](problems.md#dci)|1.0.3    |__+3__ |        |       |
+|[degreenet](problems.md#degreenet)|1.3-6    |__+1__ |        |       |
+|[DiagrammeR](problems.md#diagrammer)|1.0.11   |__+2__ |        |       |
+|[ECoL](problems.md#ecol)|0.3.0    |__+2__ |        |       |
+|[FrF2](problems.md#frf2)|2.3-4    |       |        |__+1__ |
+|[ggm](problems.md#ggm)|2.5.2    |__+1__ |        |       |
+|[ggraph](problems.md#ggraph)|2.2.2    |__+2__ |        |       |
+|[GoodFitSBM](problems.md#goodfitsbm)|0.0.1    |__+1__ |        |       |
+|[jewel](problems.md#jewel)|2.0.2    |__+1__ |        |       |
+|[migraph](problems.md#migraph)|1.6.2    |__+1__ |        |       |
+|[nat](problems.md#nat)|1.8.25   |__+3__ |        |       |
+|[optbdmaeAT](problems.md#optbdmaeat)|1.0.2    |__+1__ |        |       |
+|[optrcdmaeAT](problems.md#optrcdmaeat)|1.0.1    |__+1__ |        |       |
+|[qgraph](problems.md#qgraph)|1.9.8    |__+1__ |        |       |
+|[R6causal](problems.md#r6causal)|0.8.3    |       |__+1__  |       |
+|[rSpectral](problems.md#rspectral)|1.0.0.14 |__+1__ |        |       |
+|[scistreer](problems.md#scistreer)|1.2.1    |__+1__ |        |1      |
+|[sfnetworks](problems.md#sfnetworks)|0.6.5    |__+1__ |        |       |
+|[tidygraph](problems.md#tidygraph)|1.3.1    |__+2__ |        |1      |
+|[vkR](problems.md#vkr)|0.2      |       |__+1__  |       |
 
diff --git a/revdep/cran.md b/revdep/cran.md
index 2f5dfaab7e..ee83bebdb5 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -2,14 +2,23 @@
 
 We checked 2283 reverse dependencies (2281 from CRAN + 2 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 15 new problems
- * We failed to check 8 packages
+ * We saw 25 new problems
+ * We failed to check 9 packages
 
 Issues with CRAN packages are summarised below.
 
 ### New problems
 (This reports the first line of each new failure)
 
+* Boptbd
+  checking examples ... ERROR
+
+* c3net
+  checking examples ... ERROR
+
+* Cascade
+  checking whether package ‘Cascade’ can be installed ... WARNING
+
 * comato
   checking examples ... ERROR
 
@@ -24,6 +33,10 @@ Issues with CRAN packages are summarised below.
 * degreenet
   checking examples ... ERROR
 
+* DiagrammeR
+  checking examples ... ERROR
+  checking tests ... ERROR
+
 * ECoL
   checking examples ... ERROR
   checking tests ... ERROR
@@ -31,6 +44,9 @@ Issues with CRAN packages are summarised below.
 * FrF2
   checking tests ... NOTE
 
+* ggm
+  checking examples ... ERROR
+
 * ggraph
   checking examples ... ERROR
   checking re-building of vignette outputs ... ERROR
@@ -38,6 +54,9 @@ Issues with CRAN packages are summarised below.
 * GoodFitSBM
   checking examples ... ERROR
 
+* jewel
+  checking examples ... ERROR
+
 * migraph
   checking tests ... ERROR
 
@@ -46,15 +65,27 @@ Issues with CRAN packages are summarised below.
   checking tests ... ERROR
   checking re-building of vignette outputs ... ERROR
 
+* optbdmaeAT
+  checking examples ... ERROR
+
+* optrcdmaeAT
+  checking examples ... ERROR
+
 * qgraph
   checking examples ... ERROR
 
 * R6causal
   checking whether package ‘R6causal’ can be installed ... WARNING
 
+* rSpectral
+  checking tests ... ERROR
+
 * scistreer
   checking examples ... ERROR
 
+* sfnetworks
+  checking tests ... ERROR
+
 * tidygraph
   checking examples ... ERROR
   checking tests ... ERROR
@@ -64,11 +95,12 @@ Issues with CRAN packages are summarised below.
 
 ### Failed to check
 
-* blavaan    (NA)
-* caugi      (NA)
-* deepSTRAPP (NA)
-* ggpicrust2 (NA)
-* rsat       (NA)
-* scAnnotate (NA)
-* spopt      (NA)
-* streamDAG  (NA)
+* blavaan     (NA)
+* caugi       (NA)
+* ClustAssess (NA)
+* deepSTRAPP  (NA)
+* ggpicrust2  (NA)
+* rsat        (NA)
+* scAnnotate  (NA)
+* spopt       (NA)
+* streamDAG   (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index 8322cef76f..d8fb7ac6a9 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -2030,6 +2030,7 @@ ERROR: compilation failed for package ‘blavaan’
 
 
 ```
+
 # caugi (1.2.0)
 
 * GitHub: <https://github.com/frederikfabriciusbjerre/caugi>
@@ -2086,6 +2087,164 @@ ERROR: configuration failed for package ‘caugi’
 
 
 ```
+
+# ClustAssess (1.1.0)
+
+* GitHub: <https://github.com/Core-Bioinformatics/ClustAssess>
+* Email: <mailto:am3019@cam.ac.uk>
+* GitHub mirror: <https://github.com/cran/ClustAssess>
+
+Run `revdepcheck::cloud_details(, "ClustAssess")` for more info
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/ClustAssess/new/ClustAssess.Rcheck’
+* using R version 4.5.1 (2025-06-13)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ClustAssess/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘ClustAssess’ version ‘1.1.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... INFO
+Package suggested but not available for checking: ‘monocle3’
+* checking if this is a source package ... OK
+* checking if there is a namespace ... OK
+* checking for executable files ... OK
+* checking for hidden files and directories ... OK
+* checking for portable file names ... OK
+* checking for sufficient/correct file permissions ... OK
+* checking whether package ‘ClustAssess’ can be installed ... OK
+* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+* checking installed package size ... INFO
+  installed size is  5.4Mb
+  sub-directories of 1Mb or more:
+    R      1.5Mb
+    libs   3.7Mb
+* checking package directory ... OK
+* checking DESCRIPTION meta-information ... OK
+* checking top-level files ... OK
+* checking for left-over files ... OK
+* checking index information ... OK
+* checking package subdirectories ... OK
+* checking code files for non-ASCII characters ... OK
+* checking R files for syntax errors ... OK
+* checking whether the package can be loaded ... OK
+* checking whether the package can be loaded with stated dependencies ... OK
+* checking whether the package can be unloaded cleanly ... OK
+* checking whether the namespace can be loaded with stated dependencies ... OK
+* checking whether the namespace can be unloaded cleanly ... OK
+* checking loading without being on the library search path ... OK
+* checking dependencies in R code ... OK
+* checking S3 generic/method consistency ... OK
+* checking replacement functions ... OK
+* checking foreign function calls ... OK
+* checking R code for possible problems ... OK
+* checking Rd files ... OK
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking line endings in C/C++/Fortran sources/headers ... OK
+* checking compiled code ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+  Running ‘testthat.R’
+* DONE
+Status: OK
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/ClustAssess/old/ClustAssess.Rcheck’
+* using R version 4.5.1 (2025-06-13)
+* using platform: x86_64-pc-linux-gnu
+* R was compiled by
+    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
+* running under: Ubuntu 24.04.3 LTS
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ClustAssess/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘ClustAssess’ version ‘1.1.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... INFO
+Package suggested but not available for checking: ‘monocle3’
+* checking if this is a source package ... OK
+* checking if there is a namespace ... OK
+* checking for executable files ... OK
+* checking for hidden files and directories ... OK
+* checking for portable file names ... OK
+* checking for sufficient/correct file permissions ... OK
+* checking whether package ‘ClustAssess’ can be installed ... OK
+* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
+* checking installed package size ... INFO
+  installed size is  5.4Mb
+  sub-directories of 1Mb or more:
+    R      1.5Mb
+    libs   3.7Mb
+* checking package directory ... OK
+* checking DESCRIPTION meta-information ... OK
+* checking top-level files ... OK
+* checking for left-over files ... OK
+* checking index information ... OK
+* checking package subdirectories ... OK
+* checking code files for non-ASCII characters ... OK
+* checking R files for syntax errors ... OK
+* checking whether the package can be loaded ... OK
+* checking whether the package can be loaded with stated dependencies ... OK
+* checking whether the package can be unloaded cleanly ... OK
+* checking whether the namespace can be loaded with stated dependencies ... OK
+* checking whether the namespace can be unloaded cleanly ... OK
+* checking loading without being on the library search path ... OK
+* checking dependencies in R code ... OK
+* checking S3 generic/method consistency ... OK
+* checking replacement functions ... OK
+* checking foreign function calls ... OK
+* checking R code for possible problems ... OK
+* checking Rd files ... OK
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking line endings in C/C++/Fortran sources/headers ... OK
+* checking compiled code ... OK
+* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+  Running ‘testthat.R’
+* DONE
+Status: OK
+
+
+
+
+
+```
+
 # deepSTRAPP (1.0.0)
 
 * GitHub: <https://github.com/MaelDore/deepSTRAPP>
@@ -2256,6 +2415,7 @@ Status: OK
 
 
 ```
+
 # ggpicrust2 (2.5.14)
 
 * GitHub: <https://github.com/cafferychen777/ggpicrust2>
@@ -2430,6 +2590,7 @@ Status: OK
 
 
 ```
+
 # MiscMetabar (NA)
 
 * : <UNKNOWN>
@@ -2458,6 +2619,7 @@ Run `revdepcheck::cloud_details(, "MiscMetabar")` for more info
 
 
 ```
+
 # richCluster (NA)
 
 * : <UNKNOWN>
@@ -2486,6 +2648,7 @@ Run `revdepcheck::cloud_details(, "richCluster")` for more info
 
 
 ```
+
 # rsat (0.1.21)
 
 * GitHub: <https://github.com/ropensci/rsat>
@@ -2542,6 +2705,7 @@ ERROR: lazy loading failed for package ‘rsat’
 
 
 ```
+
 # scAnnotate (0.3)
 
 * Email: <mailto:xuekui@uvic.ca>
@@ -2597,6 +2761,7 @@ ERROR: lazy loading failed for package ‘scAnnotate’
 
 
 ```
+
 # spopt (0.1.2)
 
 * GitHub: <https://github.com/walkerke/spopt-r>
@@ -2693,6 +2858,7 @@ ERROR: compilation failed for package ‘spopt’
 
 
 ```
+
 # streamDAG (1.6)
 
 * Email: <mailto:ahoken@isu.edu>
diff --git a/revdep/problems.md b/revdep/problems.md
index d70e45da85..36351d850f 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,3 +1,97 @@
+# Boptbd (1.0.7)
+
+* Email: <mailto:diboobayu@gmail.com>
+* GitHub mirror: <https://github.com/cran/Boptbd>
+
+Run `revdepcheck::cloud_details(, "Boptbd")` for more info
+
+## Newly broken
+
+*   checking examples ... ERROR
+     ```
+     ...
+     > ### Title: Creates the graphical layout of resultant optimal design
+     > ### Aliases: graphoptBbd
+     > ### Keywords: Graphical layout
+     > 
+     > ### ** Examples
+     > 
+     >     ##To create the graphical layout of the D-optimal block design
+     >     ##obtained using the treatment exchange algorithm for 
+     >     trt.N <- 10  #Number of treatments
+     >     blk.N <- 10  #Number of blocks
+     >     alpha <- 0.1 #alpha value 
+     >     beta  <- 0.1 #beta value 
+     >     OptdesF <- rbind(1:10, c(2:10,1)) #Bayesian A-optimal block design (loop design)
+     > 
+     >     graphoptBbd(trt.N = 10, blk.N = 10, alpha = 0.1, beta = 0.1, OptdesF, Optcrit = "A")
+     Error:
+     ! `tkplot()` was deprecated in igraph 3.0.0 and is now defunct.
+     Backtrace:
+         ▆
+      1. └─Boptbd::graphoptBbd(...)
+      2.   └─igraph::tkplot(...)
+      3.     └─lifecycle::deprecate_stop("3.0.0", "tkplot()")
+      4.       └─lifecycle:::deprecate_stop0(msg)
+      5.         └─rlang::cnd_signal(...)
+     Execution halted
+     ```
+
+# c3net (1.1.1.1)
+
+* Email: <mailto:altayscience@gmail.com>
+* GitHub mirror: <https://github.com/cran/c3net>
+
+Run `revdepcheck::cloud_details(, "c3net")` for more info
+
+## Newly broken
+
+*   checking examples ... ERROR
+     ```
+     Running examples in ‘c3net-Ex.R’ failed
+     The error most likely occurred in:
+     
+     > ### Name: c3net
+     > ### Title: All in one function to infer network with C3NET
+     > ### Aliases: c3net
+     > ### Keywords: misc
+     > 
+     > ### ** Examples
+     > 
+     > data(expdata)
+     > data(truenet)
+     > 
+     > net <- c3net(expdata, network=TRUE)
+     Error:
+     ! `tkplot()` was deprecated in igraph 3.0.0 and is now defunct.
+     Backtrace:
+         ▆
+      1. └─c3net::c3net(expdata, network = TRUE)
+      2.   └─c3net::netplot(net)
+      3.     └─igraph::tkplot(z)
+      4.       └─lifecycle::deprecate_stop("3.0.0", "tkplot()")
+      5.         └─lifecycle:::deprecate_stop0(msg)
+      6.           └─rlang::cnd_signal(...)
+     Execution halted
+     ```
+
+# Cascade (2.3)
+
+* GitHub: <https://github.com/fbertran/Cascade>
+* Email: <mailto:frederic.bertrand@lecnam.net>
+* GitHub mirror: <https://github.com/cran/Cascade>
+
+Run `revdepcheck::cloud_details(, "Cascade")` for more info
+
+## Newly broken
+
+*   checking whether package ‘Cascade’ can be installed ... WARNING
+     ```
+     Found the following significant warnings:
+       Warning: replacing previous import ‘igraph::circulant’ by ‘magic::circulant’ when loading ‘Cascade’
+     See ‘/tmp/workdir/Cascade/new/Cascade.Rcheck/00install.out’ for details.
+     ```
+
 # comato (1.1)
 
 * Email: <mailto:andreas.muehling@tum.de>
@@ -214,6 +308,76 @@ Run `revdepcheck::cloud_details(, "degreenet")` for more info
      Execution halted
      ```
 
+# DiagrammeR (1.0.11)
+
+* GitHub: <https://github.com/rich-iannone/DiagrammeR>
+* Email: <mailto:riannone@me.com>
+* GitHub mirror: <https://github.com/cran/DiagrammeR>
+
+Run `revdepcheck::cloud_details(, "DiagrammeR")` for more info
+
+## Newly broken
+
+*   checking examples ... ERROR
+     ```
+     ...
+     > # for all nodes in the graph
+     > graph %>%
+     +   get_leverage_centrality()
+     Error in `purrr::map()`:
+     ℹ In index: 1.
+     Caused by error in `igraph::neighbors()`:
+     ! `vid` must specify exactly one vertex
+     Backtrace:
+          ▆
+       1. ├─graph %>% get_leverage_centrality()
+       2. ├─DiagrammeR::get_leverage_centrality(.)
+       3. │ ├─... %>% unlist()
+       4. │ └─purrr::map(...)
+       5. │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
+       6. │     ├─purrr:::with_indexed_errors(...)
+       7. │     │ └─base::withCallingHandlers(...)
+       8. │     ├─purrr:::call_with_cleanup(...)
+       9. │     └─DiagrammeR (local) .f(.x[[i]], ...)
+      10. │       ├─base::mean(...)
+      11. │       └─igraph::neighbors(ig_graph, degree_vals)
+      12. │         └─igraph:::neighbors_impl(graph = graph, vid = v, mode = mode)
+      13. │           └─cli::cli_abort(...)
+      14. │             └─rlang::abort(...)
+      15. └─base::unlist(.)
+     Execution halted
+     ```
+
+*   checking tests ... ERROR
+     ```
+     ...
+         'test-add_graphs.R:3:1', 'test-add_graphs.R:223:1',
+         'test-add_graphs.R:1706:1', 'test-add_nodes_edges_from_table.R:268:1',
+         'test-cache_attrs.R:3:1', 'test-colorize_nodes_edges.R:219:1',
+         'test-create_combine_nodes.R:3:1', 'test-create_subgraph.R:3:1',
+         'test-delete_node_edge.R:255:1',
+         'test-get_select_last_nodes_edges_created.R:75:1',
+         'test-graph_series.R:323:1', 'test-graph_validation.R:3:1',
+         'test-graph_validation.R:234:1', 'test-graph_validation.R:292:1',
+         'test-render_graph.R:3:3', 'test-selections.R:1:1',
+         'test-set_get_node_edge_attrs.R:236:1', 'test-similarity_measures.R:1:1',
+         'test-similarity_measures.R:113:1', 'test-transform_graph.R:98:1',
+         'test-transform_graph.R:262:1', 'test-trav_out_until.R:1:1',
+         'test-traversals.R:3:1'
+       
+       ══ Failed tests ════════════════════════════════════════════════════════════════
+       ── Error ('test-get_node_calculations.R:255:3'): Getting leverage centrality is possible ──
+       <purrr_error_indexed/rlang_error/error/condition>
+       Error in `purrr::map(seq_along(degree_vals), function(x) {     mean((degree_vals[x] - degree_vals[igraph::neighbors(ig_graph, degree_vals)])/(degree_vals[x] + degree_vals[igraph::neighbors(ig_graph, degree_vals)])) })`: i In index: 1.
+       Caused by error in `igraph::neighbors()`:
+       ! `vid` must specify exactly one vertex
+       
+       [ FAIL 1 | WARN 3 | SKIP 24 | PASS 1796 ]
+       Error:
+       ! Test failures.
+       Execution halted
+     ```
+
 # ECoL (0.3.0)
 
 * GitHub: <https://github.com/lpfgarcia/ECoL>
@@ -323,6 +487,45 @@ Run `revdepcheck::cloud_details(, "FrF2")` for more info
        Comparing ‘pbtest.Rout’ to ‘pbtest.Rout.save’ ... OK
      ```
 
+# ggm (2.5.2)
+
+* Email: <mailto:giovanni.marchetti@unifi.it>
+* GitHub mirror: <https://github.com/cran/ggm>
+
+Run `revdepcheck::cloud_details(, "ggm")` for more info
+
+## Newly broken
+
+*   checking examples ... ERROR
+     ```
+     ...
+     +              0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,
+     +              0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
+     +              0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
+     +              0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,
+     +              0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,
+     +              0,0,0,0,1,0,1,0,1,1,0,0,0,0,0,0,
+     +              1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
+     +              0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,
+     +              0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
+     +              1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,
+     +              0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0),16,16,byrow=TRUE)
+     > M <- c(3,5,6,15,16)
+     > C <- c(4,7)
+     > AG(ex, M, C, plot = TRUE)
+     Error:
+     ! `tkplot()` was deprecated in igraph 3.0.0 and is now defunct.
+     Backtrace:
+         ▆
+      1. └─ggm::AG(ex, M, C, plot = TRUE)
+      2.   └─ggm (local) plotfun(fr, ...)
+      3.     └─igraph::tkplot(...)
+      4.       └─lifecycle::deprecate_stop("3.0.0", "tkplot()")
+      5.         └─lifecycle:::deprecate_stop0(msg)
+      6.           └─rlang::cnd_signal(...)
+     Execution halted
+     ```
+
 # ggraph (2.2.2)
 
 * GitHub: <https://github.com/thomasp85/ggraph>
@@ -433,6 +636,46 @@ Run `revdepcheck::cloud_details(, "GoodFitSBM")` for more info
      Execution halted
      ```
 
+# jewel (2.0.2)
+
+* GitHub: <https://github.com/annaplaksienko/jewel>
+* Email: <mailto:anna@plaxienko.com>
+* GitHub mirror: <https://github.com/cran/jewel>
+
+Run `revdepcheck::cloud_details(, "jewel")` for more info
+
+## Newly broken
+
+*   checking examples ... ERROR
+     ```
+     ...
+     The error most likely occurred in:
+     
+     > ### Name: constructWeights
+     > ### Title: Construct weights for _jewel_ minimization problem from prior
+     > ###   information on vertices degrees.
+     > ### Aliases: constructWeights
+     > 
+     > ### ** Examples
+     > 
+     > {
+     + K <- 3
+     + p <- 50
+     + n <- 20
+     + data <- generateData_rewire(K = K, p = p, n = n, ncores = 1, verbose = FALSE)
+     + G_list_true <- data$Graphs
+     + true_degrees <- rowSums(G_list_true[[1]])
+     + cut <- sort(true_degrees, decreasing = TRUE)[ceiling(p * 0.03)]
+     + apriori_hubs <- ifelse(true_degrees >= cut, 10, 1)
+     + W <- constructWeights(apriori_hubs, K = K)
+     + }
+     Error in rewire_impl(rewire = graph, n = niter, mode = mode) : 
+       The value 2.4500000000000002 is not representable as an integer. Invalid value
+     Source: rinterface_extra.c:83
+     Calls: generateData_rewire ... do_call -> eval -> eval -> <Anonymous> -> rewire_impl
+     Execution halted
+     ```
+
 # migraph (1.6.2)
 
 * GitHub: <https://github.com/stocnet/migraph>
@@ -573,6 +816,84 @@ Run `revdepcheck::cloud_details(, "nat")` for more info
      Execution halted
      ```
 
+# optbdmaeAT (1.0.2)
+
+* Email: <mailto:diboobayu@gmail.com>
+* GitHub mirror: <https://github.com/cran/optbdmaeAT>
+
+Run `revdepcheck::cloud_details(, "optbdmaeAT")` for more info
+
+## Newly broken
+
+*   checking examples ... ERROR
+     ```
+     ...
+     > ### Name: graphoptbd.mae
+     > ### Title: Creates the graphical layout of resultant optimal design
+     > ### Aliases: graphoptbd.mae
+     > ### Keywords: Graphical layout
+     > 
+     > ### ** Examples
+     > 
+     >     ##To create the graphical layout of the D-optimal block design
+     >     ##obtained using the treatment exchange algorithm for 
+     >     trt.N <- 10  #Number of treatments
+     >     blk.N <- 10  #Number of blocks
+     >     theta <- 0.2 #theta value 
+     >     OptdesF <- rbind(1:10, c(2:10,1)) #D-optimal design (loop design)
+     > 
+     >     graphoptbd.mae(trt.N = 10, blk.N = 10, theta = 0.2, OptdesF, Optcrit = "D", cbVal2 = 0)
+     Error:
+     ! `tkplot()` was deprecated in igraph 3.0.0 and is now defunct.
+     Backtrace:
+         ▆
+      1. └─optbdmaeAT::graphoptbd.mae(...)
+      2.   └─igraph::tkplot(...)
+      3.     └─lifecycle::deprecate_stop("3.0.0", "tkplot()")
+      4.       └─lifecycle:::deprecate_stop0(msg)
+      5.         └─rlang::cnd_signal(...)
+     Execution halted
+     ```
+
+# optrcdmaeAT (1.0.1)
+
+* Email: <mailto:diboobayu@gmail.com>
+* GitHub mirror: <https://github.com/cran/optrcdmaeAT>
+
+Run `revdepcheck::cloud_details(, "optrcdmaeAT")` for more info
+
+## Newly broken
+
+*   checking examples ... ERROR
+     ```
+     ...
+     > 
+     > ### ** Examples
+     > 
+     >     ##To create the graphical layout of the D-optimal row-column design
+     >     ##obtained using the treatment exchange algorithm for 
+     >     
+     >     trt.N <- 10  #Number of treatments
+     >     
+     >     col.N <- 10  #Number of arrays
+     >     
+     >     theta <- 0.2 #theta value 
+     >     
+     >     OptdesF <- rbind(1:10, c(2:10, 1)) #D-optimal design (loop design)
+     > 
+     >     graphoptrcd.mae(trt.N = 10, col.N = 10, theta = 0.2, OptdesF, Optcrit = "D", cbVal2 = 0)
+     Error:
+     ! `tkplot()` was deprecated in igraph 3.0.0 and is now defunct.
+     Backtrace:
+         ▆
+      1. └─optrcdmaeAT::graphoptrcd.mae(...)
+      2.   └─igraph::tkplot(...)
+      3.     └─lifecycle::deprecate_stop("3.0.0", "tkplot()")
+      4.       └─lifecycle:::deprecate_stop0(msg)
+      5.         └─rlang::cnd_signal(...)
+     Execution halted
+     ```
+
 # qgraph (1.9.8)
 
 * GitHub: <https://github.com/SachaEpskamp/qgraph>
@@ -631,6 +952,46 @@ Run `revdepcheck::cloud_details(, "R6causal")` for more info
      See ‘/tmp/workdir/R6causal/new/R6causal.Rcheck/00install.out’ for details.
      ```
 
+# rSpectral (1.0.0.14)
+
+* GitHub: <https://github.com/cmclean5/rSpectral>
+* Email: <mailto:lptolik@gmail.com>
+* GitHub mirror: <https://github.com/cran/rSpectral>
+
+Run `revdepcheck::cloud_details(, "rSpectral")` for more info
+
+## Newly broken
+
+*   checking tests ... ERROR
+     ```
+     ...
+       This graph was created by an old(er) igraph version.
+       i Call `igraph::upgrade_graph()` on it to use with the current igraph version.
+       For now we convert it on the fly...
+       Saving _problems/test-igraph-19.R
+       Saving _problems/test-igraph-26.R
+       [ FAIL 2 | WARN 4 | SKIP 0 | PASS 10 ]
+       
+       ══ Failed tests ════════════════════════════════════════════════════════════════
+       ── Failure ('test-igraph.R:19:3'): membership fix_neig=0 is correct ────────────
+       Expected `c$modularity` to equal `exp_mod10`.
+       Differences:
+         `actual`: 0.432
+       `expected`: 0.408
+       
+       ── Failure ('test-igraph.R:26:3'): membership fix_neig=1 is correct ────────────
+       Expected `c$modularity` to equal `exp_mod11`.
+       Differences:
+         `actual`: 0.3758
+       `expected`: 0.3776
+       
+       
+       [ FAIL 2 | WARN 4 | SKIP 0 | PASS 10 ]
+       Error:
+       ! Test failures.
+       Execution halted
+     ```
+
 # scistreer (1.2.1)
 
 * GitHub: <https://github.com/kharchenkolab/scistreer>
@@ -679,6 +1040,46 @@ Run `revdepcheck::cloud_details(, "scistreer")` for more info
        All declared Imports should be used.
      ```
 
+# sfnetworks (0.6.5)
+
+* GitHub: <https://github.com/luukvdmeer/sfnetworks>
+* Email: <mailto:luukvandermeer@live.nl>
+* GitHub mirror: <https://github.com/cran/sfnetworks>
+
+Run `revdepcheck::cloud_details(, "sfnetworks")` for more info
+
+## Newly broken
+
+*   checking tests ... ERROR
+     ```
+     ...
+       [ FAIL 1 | WARN 0 | SKIP 0 | PASS 276 ]
+       
+       ══ Failed tests ════════════════════════════════════════════════════════════════
+       ── Error ('test_paths.R:41:3'): Only the first from argument
+                 is used for shortest paths calculations ──
+       Error in `all_shortest_paths(x, from, to, weights = weights, ...)`: `from` must specify exactly one vertex
+       Backtrace:
+            ▆
+         1. ├─testthat::expect_warning(...) at test_paths.R:41:3
+         2. │ └─testthat:::quasi_capture(...)
+         3. │   ├─testthat (local) .capture(...)
+         4. │   │ └─base::withCallingHandlers(...)
+         5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
+         6. ├─sfnetworks::st_network_paths(...)
+         7. └─sfnetworks:::st_network_paths.sfnetwork(...)
+         8.   └─sfnetworks:::get_all_shortest_paths(...)
+         9.     └─igraph::all_shortest_paths(x, from, to, weights = weights, ...)
+        10.       └─igraph:::get_all_shortest_paths_dijkstra_impl(...)
+        11.         └─cli::cli_abort(...)
+        12.           └─rlang::abort(...)
+       
+       [ FAIL 1 | WARN 0 | SKIP 0 | PASS 276 ]
+       Error:
+       ! Test failures.
+       Execution halted
+     ```
+
 # tidygraph (1.3.1)
 
 * GitHub: <https://github.com/thomasp85/tidygraph>