phaser/pyproject.toml at main · hexane360/phaser · GitHub

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[build-system]
requires = ["setuptools>=51.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "phaserEM"
version = "0.2"
authors = [
  {name = "Colin Gilgenbach", email = "hexane@mit.edu"}
]
description = "Weapon of choice for electron ptychographic reconstructions"
readme = {file = "README.md", content-type = "text/markdown"}
keywords = ["science", "atoms", "materials", "chemistry"]
license = "MPL-2.0"
license-files = ["LICENSE.txt"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Physics",
    "Typing :: Typed",
]

requires-python = ">=3.10"
dependencies = [
    "numpy>=1.22,<2.6",  # tested on 1.26, 2.3
    "scipy>=1.7.0,<1.19", # tested on 1.11, 1.16
    "matplotlib~=3.8",
    "h5py~=3.8",
    "pyyaml>=5.3.1",
    "click~=8.1.0",
    "rich>=12.0.0,<15",
    "tifffile>=2023.8.25",
    "py-pane==0.11.3",
    "typing_extensions~=4.7",
]

[project.optional-dependencies]
dev = [
    "pytest>=6.2.4",
    "pytest-cov>=3.0.0",
    "coveragepy-lcov>=0.1.1",
]
cupy11 = [
    "cupy-cuda11x>=12.0.0",
    "pynvml>=11.0.0",
]
cupy12 = [
    "cupy-cuda12x>=12.0.0",
    "pynvml>=11.0.0",
]
jax = [
    # 0.4.25 is last version supporting cuda 11.8, we need to support it.
    # tested on 0.4.25, 0.5.x, 0.6.x, and 0.7.0
    "jax>=0.4.25,<0.8",
    "optax>=0.2.2",
]
web = [
    "Quart>=0.20.0",
    "backoff==2.2.1",
    "requests>=2.31.0",
]
docs = [
    "mkdocs==1.6.1",
    "mkdocs-material==9.6.11",
    "mkdocstrings[python]==0.29.1",
    "markdown-include==0.8.1",
    "mike==2.1.3",
    "black>=25.1.0",
]

[project.urls]
Repository = "https://github.com/hexane360/phaser.git"
Documentation = "https://hexane360.github.io/phaser/dev"

[project.scripts]
phaser = "phaser.main:cli"

[tool.setuptools.packages.find]
include = ["phaser*"]

[tool.setuptools.package-data]
"phaser.web.dist" = ["*"]
"phaser.web.templates" = ["*"]

[tool.pytest.ini_options]
testpaths = ["tests"]
markers = [
    "cuda: Run on CUDA backend",
    "jax: Run on jax backend",
    "cpu: Run on CPU backend",
    "slow: mark a test as slow",

    "expected_filename: Filename to load expected result from",
]

[tool.pyright]
typeCheckingMode = "standard"
exclude = [
    "tests", "notebooks/", "examples", ".github",
    "build", "venv", ".venv",
    "**/node_modules", "**/__pycache__"
]

reportIncompatibleMethodOverride = "information"