- R package, paper
- can probably be used with other data types, too
- github repo
- features:
- Data normalization and data transformation
- Univariate statistical analyses with hypothesis testing procedures that are automatically selected based on study designs
- Joint and interactive visualization of genes, proteins and metabolites in different combinations of networks
- Calculation of data-driven networks using correlation-based approaches
- Calculation of chemical structure similarity networks from substructure fingerprints
- Functional interpretation with overrepresentation analysis, functional class scoring and WordCloud generation
- internal graph database: a pre-compiled graph database, which is used for collecting prior knowledge from several resources (Note: based on GRCh38 (!))