04-using_data.Rmd

# Using SRA Data on Galaxy

Let's see an example of using some of our SRA data in an analysis. We will use FastQC to check the quality of our files.

## Launch Galaxy

On the ANALYSES tab, select START and select the Galaxy application.

```{r, fig.align='center', echo = FALSE, fig.alt= "On the ANALYSES tab, select START and select the Galaxy application", out.width = '100%'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1l0P0gFpsPkYG7blqJ_5JyYYlztJFZDD39CnIB4svrY8/edit#slide=id.g208b8f790dc_23_191")
```

Click NEXT to provision the default environment.

```{r, fig.align='center', echo = FALSE, fig.alt= "NEXT button highlighted on the Cloud Environment popup", out.width = '100%'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1l0P0gFpsPkYG7blqJ_5JyYYlztJFZDD39CnIB4svrY8/edit#slide=id.g208b8f790dc_23_200")
```

Click CREATE. The environment will take ~7 minutes to provision.

```{r, fig.align='center', echo = FALSE, fig.alt= "CREATE button highlighted on the Cloud Environment popup", out.width = '100%'}
ottrpal::include_slide("https://docs.google.com/presentation/d/1l0P0gFpsPkYG7blqJ_5JyYYlztJFZDD39CnIB4svrY8/edit#slide=id.g208b8f790dc_23_209")
```



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## Summary

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