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# for HarrisZ
import torch
import numpy as np
from PIL import Image
import torchvision.transforms as tt
from torchvision.transforms import v2
# for demo
import sys
import os
# for visualization
import time
import matplotlib.pyplot as plt
from matplotlib.patches import Ellipse
# for Kornia
try:
import kornia as K
import kornia.feature as KF
from kornia_moons.viz import visualize_LAF
import cv2
kornia_on = True
except:
kornia_on = False
import warnings
warnings.warn("Kornia e Kornia-Moons not found: skipping the related demo part")
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
def plot_hz_eli(image, kpts, save_to='harrisz_pytorch_eli.pdf', dpi=150, c_color='b', c_marker='.', markersize=1, e_color='b', linewidth=0.5):
plt.figure()
plt.axis('off')
plt.imshow(Image.open(image))
pts = kpts['center'].to('cpu').numpy()
eli_axes =kpts['axes'].to('cpu').numpy()
eli_rot = kpts['rotation'].to('cpu').numpy()
ax = plt.gca()
plt.plot(pts[:, 0], pts[:, 1], linestyle='', color=c_color, marker=c_marker, markersize=markersize)
for i in range(pts.shape[0]):
eli = Ellipse(xy=(pts[i, 0], pts[i, 1]), width=eli_axes[i, 0], height=eli_axes[i, 1], angle=eli_rot[i],
facecolor='none', edgecolor=e_color, linewidth=linewidth)
ax.add_patch(eli)
if not(save_to is None):
plt.savefig(save_to, dpi=dpi, bbox_inches='tight')
def load_to_tensor(image_path, grayscale=False):
image = Image.open(image_path)
what = [tt.PILToTensor()]
if grayscale: what.append(tt.Grayscale())
transform = tt.Compose(what)
return transform(image).to(device)
def derivative(img):
dx_dy = torch.cat((img[:, 1:img.shape[1]-1, :img.shape[2]-2] - img[:, 1:img.shape[1]-1, 2:img.shape[2]],
img[:, :img.shape[1]-2, 1:img.shape[2]-1] - img[:, 2:img.shape[1], 1:img.shape[2]-1]), dim=0)
dx_dy = torch.nn.functional.pad(dx_dy,(1,1,1,1,0,0), mode='constant', value=0)
return dx_dy
def zscore(im):
s = im.std()
if not (s==0):
z = (im - torch.mean(im)) / s
else:
z = torch.zeros_like(im)
return z
def max_mask(img, rd, dm_mask, rad_max=3, block_mem=16*10**6, prev_filter={'k': 0}, max_max_pts=np.inf):
rad = min(rad_max, max(1, round(rd / np.sqrt(2))));
k = 2 * rad + 1
if prev_filter['k'] == k:
max_filter = prev_filter['max_filter']
avg_filter = prev_filter['avg_filter']
else:
max_filter = torch.nn.MaxPool2d(k, stride=1, padding=rad)
avg_filter = torch.nn.AvgPool2d(k, stride=1, padding=rad)
max_img = max_filter(img) == img
unique_max_img = ((avg_filter(max_img.type(torch.float)) * k**2) == 1) & max_img
ismax = unique_max_img & (img > 0) & dm_mask
rc = torch.argwhere(ismax)
if rc.shape[0] == 0:
return torch.zeros((0,2), device=device, dtype=torch.int)
rc_flat_index = rc[:, 1] * img.shape[2] + rc[:, 2]
max_val = img.flatten()[rc_flat_index]
sidx = torch.argsort(max_val, descending=True)
rc = rc[sidx, 1:]
rc_idx = select_max(rc, rd, block_mem=block_mem, max_max_pts=max_max_pts)
return rc[rc_idx], {'k': k, 'max_filter': max_filter, 'avg_filter': avg_filter}
def sub_pix(img, kp):
kp_sp = kp.type(torch.float)
r_mask = (kp[:,0] > 1) & (kp[:, 0] < img.shape[1] - 1)
v = img.flatten()[ kp[r_mask, 0] * img.shape[2] + kp[r_mask, 1]]
vl = img.flatten()[(kp[r_mask, 0] - 1) * img.shape[2] + kp[r_mask, 1]]
vr = img.flatten()[(kp[r_mask, 0] + 1) * img.shape[2] + kp[r_mask, 1]]
kp_sp[r_mask, 0] = kp[r_mask, 0] + (vr - vl) / (2 * (2*v - vl -vr))
c_mask = (kp[:,1] > 1) & (kp[:, 1] < img.shape[2] - 1)
v = img.flatten()[kp[c_mask, 0] * img.shape[2] + kp[c_mask, 1] ]
vl = img.flatten()[kp[c_mask, 0] * img.shape[2] + kp[c_mask, 1] - 1]
vr = img.flatten()[kp[c_mask, 0] * img.shape[2] + kp[c_mask, 1] + 1]
kp_sp[c_mask, 1] = kp[c_mask, 1] + (vr - vl) / (2 * (2*v - vl -vr))
return kp_sp
def get_eli(dx2, dy2, dxy, scale):
U = torch.stack((dx2, dxy, dxy, dy2), dim=-1).reshape(-1, 2, 2)
D, V = torch.linalg.eigh(U)
D = 1 / D**0.5
D = D / D[:, 0].unsqueeze(-1)
kp_ratio = torch.minimum(D[:, 0], D[:, 1])
D = torch.diag_embed(1 / (D * scale)**2)
U = V @ D @ V.transpose(1, 2)
kp_eli = torch.stack((U[:, 0, 0], U[:, 0, 1], U[:, 1, 1]), dim=1)
return kp_eli, kp_ratio
def best_derivative(dx_dy_1, dx_dy_2):
aux = aux =torch.cat((dx_dy_1, dx_dy_2), dim=1).reshape(2,2,dx_dy_1.shape[-2],dx_dy_1.shape[-1])
_, aux_abs = aux.abs().max(dim=1)
return aux.gather(dim=1, index=aux_abs[:, None]).squeeze(1)
# base version v0 - subject to OOM
def select_max_v0(rc, rd, block_mem=16*10**6, max_max_pts=np.inf):
m_idx = torch.zeros(rc.shape[0], device=device, dtype=torch.int)
m_idx[0] = 0
m_n = 1
m = torch.cdist(rc.type(torch.float), rc.type(torch.float))
for i in range(1,m_idx.shape[0]):
if (m[i, m_idx[:m_n]] >= rd).all():
m_n = m_n + 1
m_idx[i] = i
if m_n > max_max_pts: break
return m_idx[:m_n]
# memory-optimized v1 - no OOM issues
# note that when m_n_ == m_n -->
# (m[i - ii, m_idx[m_n_:m_n]] >= rd).all() = ([]).all() = True
def select_max_v1(rc, rd, block_mem=16*10**6, max_max_pts=np.inf):
m_idx = torch.zeros(rc.shape[0], device=device, dtype=torch.int)
m_idx[0] = 0
m_n = 1
ii = 1
while ii < m_idx.shape[0]:
block_len = np.ceil((np.sqrt(ii**2 + 4 * block_mem) - ii) * 0.5)
ij = int(min(m_idx.shape[0], ii + block_len))
m = torch.cdist(rc[ii:ij].type(torch.float), rc.type(torch.float))
to_check = (m[:, m_idx[:m_n]] >= rd).all(dim=1)
m_n_ = m_n
for i in range(ii, ij):
if (to_check[i - ii]) and (m[i - ii, m_idx[m_n_:m_n]] >= rd).all():
m_idx[m_n] = i
m_n = m_n + 1
if m_n > max_max_pts: break
ii = ij
return m_idx[:m_n]
# memory-optimized v2 - no OOM, actually worse than v1
# note that when m_n_ == m_n -->
# (m[i - ii, m_idx[m_n_:m_n] - ii] >= rd).all() = (m[i - ii, [] - ii] >= rd).all() = ([]).all() = True
def select_max_v2(rc, rd, block_mem=16*10**6, max_max_pts=np.inf):
m_idx = torch.zeros(rc.shape[0], device=device, dtype=torch.int)
m_idx[0] = 0
m_n = 1
block_len = int(np.ceil(np.sqrt(block_mem)))
ii = 1
for ii in np.arange(1, m_idx.shape[0], block_len):
check_bad = torch.zeros(min(m_idx.shape[0], ii + block_len) - ii, device=device, dtype=torch.bool)
ij = int(min(m_idx.shape[0], ii + block_len))
for i in np.arange(0, ii, block_len):
j = int(min(ii, i + block_len))
m = torch.cdist(rc[ii:ij].type(torch.float), rc[i:j].type(torch.float))
check_bad = check_bad | (m < rd).all(dim=1)
m = torch.cdist(rc[ii:ij].type(torch.float), rc[ii:ij].type(torch.float))
m_n_ = m_n
for i in np.arange(ii, ij):
if (not (check_bad[i - ii])) and (m[i - ii, m_idx[m_n_:m_n] - ii] >= rd).all():
m_idx[m_n] = i
m_n = m_n + 1
if m_n > max_max_pts: break
return m_idx[:m_n]
select_max = select_max_v1
def uniform_kpts(sz, kpt, max_kpts, max_kpts_cf, max_max_pts=np.inf, block_mem=16*10**6):
c_kp = torch.zeros((0, 10), device=device)
r_kp = kpt
c_d = 2 * np.sqrt(sz[1] * sz[2] / (max_kpts * np.pi/ max_kpts_cf))
while True:
if r_kp.shape[0] == 0:
break
idx = r_kp[:, 5].argsort(descending=False)
idx_ = r_kp[idx, 9].argsort(descending=False, stable=True)
idx = idx[idx_]
r_kp = r_kp[idx]
max_index = select_max(r_kp[:, :2], c_d, block_mem=block_mem, max_max_pts=max_max_pts)
c_idx = torch.zeros(r_kp.shape[0], device=device, dtype=torch.bool)
c_idx[max_index] = True
c_kp = torch.cat((c_kp, r_kp[c_idx]))
r_kp = r_kp[~c_idx]
if c_kp.shape[0] > max_max_pts:
c_kp = c_kp[:max_max_pts]
break
return c_kp
def hz(img, scale_base=np.sqrt(2), scale_ratio=1/np.sqrt(2), scale_th=0.75, n_scales=9, start_scale=3,
dm_th=0.31, cf=3, xy_offset=0.0, max_max_pts=np.inf, block_mem=16*10**6, output_format='vgg'):
kpt = torch.zeros((0, 10), device=device)
i_scale = scale_base ** np.arange(0, n_scales)
d_scale = i_scale * scale_ratio
dx_dy = derivative(img)
prev_filter={'k': 0}
for i in range(start_scale, n_scales):
rd = int(max(1, np.ceil(3 * d_scale[i])))
hd = 2 * rd + 1
smooth_d = v2.GaussianBlur(kernel_size=hd, sigma=d_scale[i])
dx_dy_d = smooth_d(dx_dy)
dm = ((dx_dy_d**2).sum(dim=0, keepdim=True)**0.5)
dm_mask = smooth_d((dm > dm.mean()).to(torch.float))
dx_dy_d = dx_dy_d * dm_mask
ri = int(max(1, np.ceil(3 * i_scale[i])))
hi = 2 * ri + 1
smooth_i = v2.GaussianBlur(kernel_size=hi, sigma=i_scale[i])
dxy = smooth_i(dx_dy_d.prod(dim=0, keepdim=True))
dx2_dy2 = smooth_i(dx_dy_d**2)
harris = zscore(dx2_dy2.prod(dim=0, keepdim=True) - dxy**2) - zscore((dx2_dy2.sum(dim=0, keepdim=True))**2)
kp, prev_filter = max_mask(harris, rd, dm_mask > dm_th, prev_filter=prev_filter, max_max_pts=max_max_pts, block_mem=block_mem)
if kp.shape[0] == 0:
continue
kp_sub_pix = sub_pix(harris, kp)
kp_s = torch.tensor([i, d_scale[i], i_scale[i]], device=device).repeat(kp.shape[0], 1)
kp_index = kp[:, 0] * harris.shape[2] + kp[:, 1]
kp_eli, kp_ratio = get_eli(dx2_dy2[0].flatten()[kp_index], dx2_dy2[1].flatten()[kp_index], dxy.flatten()[kp_index], i_scale[i] * cf)
hv = harris.flatten()[kp_index]
kpt_ = torch.cat((kp_sub_pix[:,[1, 0]], kp_eli, kp_s, kp_ratio.unsqueeze(-1), hv.unsqueeze(-1)), dim=1)
kp_good = 1 - kp_ratio < scale_th
kpt = torch.cat((kpt, kpt_[kp_good]))
idx = kpt[:, 5].argsort(descending=False, stable=True)
kpt = kpt[idx]
if kpt.shape[0] > max_max_pts:
kpt = kpt[:max_max_pts]
kpt[:, :2] = kpt[:, :2] + xy_offset
if output_format == 'vgg':
kpt[:, 2:5] = torch.linalg.inv(kpt[:, [2, 3, 3, 4]].reshape(-1, 2, 2)).reshape(-1, 4)[:, [0, 1, 3]]
return kpt[:, :5], kpt[:, -1]
elif output_format == 'laf':
kpt[:, 2:5] = kpt[:, 2:5] / cf
return kpt[:, :5], kpt[:, -1]
else:
D, V = torch.linalg.eigh(kpt[:, [2, 3, 3, 4]].reshape(-1, 2, 2))
center = kpt[:, :2]
axes = (cf / D)**0.5
rotation = torch.atan2(V[:, 1, 0], V[:, 0, 0]) * 180 / np.pi
return {'center': center, 'axes': axes, 'rotation': rotation, 'response': kpt[:, -1]}
def hz_plus(img, max_kpts=8000, fast_save_memory=False, scale_base=np.sqrt(2), scale_ratio=1/np.sqrt(2), scale_th=0.75,
n_scales=4, start_scale=0, dm_th=0.31, cf=3, xy_offset=0.0, output_format='vgg', max_max_pts=np.inf, block_mem=16*10**6, color_grad=True,
start_scale_at_2x=2, rescale_method=Image.Resampling.LANCZOS, min_scale=np.sqrt(2), sieve_rad=1, laf_offset=10, max_kpts_cf=2):
sz = img.shape
if sz[0] != 3: color_grad=False
if start_scale < start_scale_at_2x:
img_2x = tt.PILToTensor()(tt.ToPILImage()(img).resize((sz[2] * 2, sz[1] * 2), resample=rescale_method)).to(torch.float).to(device)
kpt = torch.zeros((0,9), device=device)
if color_grad:
img1 = tt.functional.rgb_to_grayscale(img)
img2 = torch.amax(img, dim=0, keepdim=True)
dx_dy_1 = derivative(img1);
dx_dy_2 = derivative(img2);
dx_dy_g = best_derivative(dx_dy_1, dx_dy_2)
dx_dy = dx_dy_1
if start_scale < start_scale_at_2x:
img1_2x = tt.functional.rgb_to_grayscale(img_2x)
img2_2x = torch.amax(img_2x, dim=0, keepdim=True)
dx_dy_1_2x = derivative(img1_2x);
dx_dy_2_2x = derivative(img2_2x);
dx_dy_g_2x = best_derivative(dx_dy_1_2x, dx_dy_2_2x)
dx_dy_2x = dx_dy_1_2x
else:
if sz[0] == 3:
img = tt.functional.rgb_to_grayscale(img)
dx_dy = derivative(img)
if start_scale < start_scale_at_2x:
if sz[0] == 3:
img_2x = tt.functional.rgb_to_grayscale(img_2x)
dx_dy_2x = derivative(img_2x);
i_scale = scale_base**np.arange(start_scale, n_scales+1)
d_scale = i_scale * scale_ratio;
is_2x_scale = np.arange(start_scale, n_scales+1) < start_scale_at_2x;
dx_dy_1x = dx_dy
if color_grad:
dx_dy_g_1x = dx_dy_g
kpt = torch.zeros((0, 10), device=device)
prev_filter={'k': 0}
for i in range(len(i_scale)):
if not is_2x_scale[i]:
dx_dy = dx_dy_1x
if color_grad: dx_dy_g = dx_dy_g_1x
else:
dx_dy = dx_dy_2x
if color_grad: dx_dy_g = dx_dy_g_2x
d_scale[i] = d_scale[i] * 2;
i_scale[i] = i_scale[i] * 2;
rd = int(max(1, np.ceil(3 * d_scale[i])))
hd = 2 * rd + 1
smooth_d = v2.GaussianBlur(kernel_size=hd, sigma=d_scale[i])
dx_dy_d = smooth_d(dx_dy)
if not color_grad:
dm = ((dx_dy_d**2).sum(dim=0, keepdim=True)**0.5)
dm_mask = smooth_d((dm > dm.mean()).to(torch.float))
else:
dx_dy_g_d = smooth_d(dx_dy_g)
dm = ((dx_dy_g_d**2).sum(dim=0, keepdim=True)**0.5)
dm_mask = smooth_d((dm > dm.mean()).to(torch.float))
dx_dy_d = dx_dy_d * dm_mask
ri = int(max(1, np.ceil(3 * i_scale[i])))
hi = 2 * ri + 1
smooth_i = v2.GaussianBlur(kernel_size=hi, sigma=i_scale[i])
dxy = smooth_i(dx_dy_d.prod(dim=0, keepdim=True))
dx2_dy2 = smooth_i(dx_dy_d**2)
harris = zscore(dx2_dy2.prod(dim=0, keepdim=True) - dxy**2) - zscore((dx2_dy2.sum(dim=0, keepdim=True))**2)
kp, prev_filter = max_mask(harris, rd, dm_mask > dm_th, prev_filter=prev_filter, max_max_pts=max_max_pts, block_mem=block_mem)
if kp.shape[0] == 0:
continue
if not is_2x_scale[i]:
double_adjust = 1
else:
double_adjust = 2
d_scale_ = max(min_scale * scale_ratio, d_scale[i] / double_adjust)
i_scale_ = max(min_scale, i_scale[i] / double_adjust)
kp_sub_pix = sub_pix(harris, kp)
kp_s = torch.tensor([i, d_scale_, i_scale_], device=device).repeat(kp.shape[0], 1)
kp_index = kp[:, 0] * harris.shape[2] + kp[:, 1]
kp_eli, kp_ratio = get_eli(dx2_dy2[0].flatten()[kp_index], dx2_dy2[1].flatten()[kp_index], dxy.flatten()[kp_index], i_scale_ * cf)
hv = harris.flatten()[kp_index]
kpt_ = torch.cat((kp_sub_pix[:,[1, 0]] / double_adjust, kp_eli, kp_s, kp_ratio.unsqueeze(-1), hv.unsqueeze(-1)), dim=1)
kp_good = 1 - kp_ratio < scale_th
kpt = torch.cat((kpt, kpt_[kp_good]))
if min_scale:
kpt = kpt[torch.argsort(kpt[:, -1], descending=True)]
to_check = kpt[:, 6] == min_scale * scale_ratio
to_hold_idx = select_max(kpt[to_check, :2], sieve_rad, block_mem=block_mem, max_max_pts=max_max_pts)
to_remove = torch.full((to_check.sum(), ), 1, device=device, dtype=torch.bool)
to_remove[to_hold_idx] = False
to_check[to_check.clone()] = to_remove
kpt = kpt[~to_check]
kpt = uniform_kpts(sz, kpt, max_kpts, max_kpts_cf, max_max_pts=max_max_pts, block_mem=block_mem)
kpt[:, :2] = kpt[:, :2] + xy_offset
if output_format == 'vgg':
kpt[:, 2:5] = torch.linalg.inv(kpt[:, [2, 3, 3, 4]].reshape(-1, 2, 2)).reshape(-1, 4)[:, [0, 1, 3]]
return kpt[:, :5], kpt[:, -1]
elif output_format == 'laf':
kpt[:, 2:5] = kpt[:, 2:5] / cf
return kpt[:, :5], kpt[:, -1]
else:
D, V = torch.linalg.eigh(kpt[:, [2, 3, 3, 4]].reshape(-1, 2, 2))
center = kpt[:, :2]
axes = (cf / D)**0.5
rotation = torch.atan2(V[:, 1, 0], V[:, 0, 0]) * 180 / np.pi
return {'center': center, 'axes': axes, 'rotation': rotation, 'response': kpt[:, -1]}
if __name__ == '__main__':
# example image
image = 'images/graf5.png'
# image = 'images/s_peter.png'
# image = 'images/wooden_lady.jpg'
# a diffent image can be passed to the demo script
if len(sys.argv) > 1:
image = sys.argv[1]
iname, iext = os.path.splitext(image)
block_memory = 16*10**6
max_pts = 8000 # np.inf
print(f"Image: {image} (other images can be passed as 1st argument of the script)")
print(f"Memory block dimension: {block_memory} floats (reduce in case of OOM)")
print(f"Max number of keypoints to extract: {max_pts} (reduce for faster computation, especially with bigger images)")
print("Note: 1. returned keypoints are sorted from the best to the worst")
print(" 2. by default all keypoints are returned, setting the related parameter to inf")
print(" 3. HarrisZ input image is only grayscale, HarrisZ+ works usually better with RGB images")
print("")
### HarrisZ
print("Running HarrisZ standalone")
# standalone usage
img = load_to_tensor(image, grayscale=True).to(torch.float)
start = time.time()
kpts = hz(img, output_format='eli', block_mem=block_memory, max_max_pts=max_pts)
end = time.time()
print(f"Extracted keypoints: {kpts['center'].shape[0]}")
print("Elapsed time: %s (HarrisZ)" % (end - start))
# show keypoints
to_save = iname + '_harrisz.pdf'
print(f"Plot keypoint ellipses and save the result in {to_save}")
start = time.time()
plot_hz_eli(image, kpts, save_to=to_save)
end = time.time()
print("Elapsed time: %s (plot)" % (end - start))
print("")
# with Kornia
if kornia_on:
print("Running HarrisZ and exporting to Kornia format")
# run and convert to laf
img = load_to_tensor(image, grayscale=True).to(torch.float)
start = time.time()
kpts, responses = hz(img, output_format='laf', block_mem=block_memory, max_max_pts=max_pts)
lafs = KF.ellipse_to_laf(kpts[None])
end = time.time()
print(f"Extracted keypoints: {kpts.shape[0]}")
print("Elapsed time: %s (HarrisZ)" % (end - start))
# show keypoints
to_save = iname + '_harrisz_kornia.pdf'
print(f"Plot keypoint ellipses in Kornia and save the result in {to_save}")
start = time.time()
# show keypoints with Kornia
img = cv2.cvtColor(cv2.imread(image), cv2.COLOR_BGR2RGB)
visualize_LAF(K.image_to_tensor(img, False), lafs, 0)
plt.axis('off')
# save the plot
plt.savefig(to_save, dpi=150, bbox_inches='tight')
end = time.time()
print("Elapsed time: %s (plot)" % (end - start))
print("")
### HarrisZ+
print("Running HarrisZ+ standalone")
# standalone usage
img = load_to_tensor(image).to(torch.float)
start = time.time()
kpts = hz_plus(img, output_format='eli', block_mem=block_memory, max_max_pts=max_pts)
end = time.time()
print(f"Extracted keypoints: {kpts['center'].shape[0]}")
print("Elapsed time: %s (HarrisZ+)" % (end - start))
# show keypoints
to_save = iname + '_harrisz_plus.pdf'
print(f"Plot keypoint ellipses and save the result in {to_save}")
start = time.time()
plot_hz_eli(image, kpts, save_to=to_save)
end = time.time()
print("Elapsed time: %s (plot)" % (end - start))
print("")
# with Kornia
if kornia_on:
print("Running HarrisZ+ and exporting to Kornia format")
# run and convert to laf
img = load_to_tensor(image).to(torch.float)
start = time.time()
kpts, responses = hz_plus(img, output_format='laf', block_mem=block_memory, max_max_pts=max_pts)
lafs = KF.ellipse_to_laf(kpts[None])
end = time.time()
print(f"Extracted keypoints: {kpts.shape[0]}")
print("Elapsed time: %s (HarrisZ+)" % (end - start))
# show keypoints
to_save = iname + '_harrisz_plus_kornia.pdf'
print(f"Plot keypoint ellipses in Kornia and save the result in {to_save}")
start = time.time()
# show keypoints with Kornia
img = cv2.cvtColor(cv2.imread(image), cv2.COLOR_BGR2RGB)
visualize_LAF(K.image_to_tensor(img, False), lafs, 0)
plt.axis('off')
# save the plot
plt.savefig(to_save, dpi=150, bbox_inches='tight')
end = time.time()
print("Elapsed time: %s (plot)" % (end - start))
print("")